Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttgattgctgttgaatgcttaattgttatattttcttataatttgttgagtagattcaaggagtaagggaagttttatttatgccaaagatctgttcaactttggtattctgttgctttgattctcactacctcaagagtttatcactagagaatgttttcatttttcttgctgattccacttttagATGATTGGTGTTTGGGTTATGTGTCTGTGGGAGCAAATGGGTCAACCAAGTAAAGTGAACCTAGTTGAGTTGGGTCCTGGACGAGGAACTCTCATGGCTG

Basic information

species Vitis vinifera
transcript Vv14s0066g02600.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g02600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G10540.1 (Glycine max), 3'ss of exon 3
gtaatttgattgctgttgaatgcttaattgttatattttcttataatttgttgagtagattcaaggagtaagggaagttttatttatgccaaagatctgttcaactttggtattctgttgctttgattctcactacctcaagagtttatcactagagaatgttttcatttttcttgctgattccacttttagATGATTGGTGTTTGGGTTATGTGTCTGTGGGAGCAAATGGGTCAACCAAGTAAAGTGAACCTAGTTGAGTTGGGTCCTGGACGAGGAACTCTCATGGCTG
                                                                |  || | |  | || |   | |    ||  | |||      ||||     ||     | || |   |     ||||     ||    |  | ||| |||      || ||| | |||  |  || ||||| ||||||| ||||| |||||||| |||||||||||||| ||||||     ||| || ||||||||| | || || || ||||||||||||||||| |
--------------------------------------------------------------gtgaggtgaagtgaattatccatttatttaac-tatgtctgttgttgggggcatg--aactagagttaaagcttgtcaatgccataaggattca-aatatttaacaccttgttgtttatttaaactt-agATGGTTGGTGTCTGGGTGATGTGTCTTTGGGAGCAAATGGGCCAACCACAAGGAGTAAATCTAGTTGAGCTTGGCCCGGGGCGAGGAACTCTCATGGCCG

upper sequence: Vv14s0066g02600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G28700.2 (Arabidopsis thaliana), 3'ss of exon 3
gtaatttgattgctgttgaatgcttaattgttatattttcttataatttgttgagtagattcaaggagtaagggaagttttatttatgccaaagatctgttcaactttggtattctgttgctttgattctcactacctcaagagtttatcactagagaatgttttcatttttcttgctgattccacttttagATGATTGGTGTTTGGGTTATGTGTCTGTGGGAGCAAATGGGTCAACCAAGTAAAGTGAACCTAGTTGAGTTGGGTCCTGGACGAGGAACTCTCATGGCTG
                                                                            | |||| ||  | |     |   ||  |   |  |    |  || |||| ||||   |   |   ||| ||   | |  ||  | || | | |||   |  ||||       |||||||||||||||||||    ||||||| ||||||||||||||    |||   |  || || || |||||| | ||||| || || ||||| |||||||| |
--------------------------------------------------------------------------gtgatttactt--ggcgtttgttgatttgagagttatgcatttgtgttttggttcta--tgttt---gagcttgagattgaag--ttttgttactttgtgttgtgatc------ttagATGATTGGTGTTTGGACCGTGTGTCTTTGGGAGCAAATGGGAAGGCCAGAGAGGGTTAATCTTGTTGAGCTAGGTCCAGGTCGGGGAACACTCATGGCCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110702770|gb|EE079032.1|EE079032
EST:     CAGAAGGTGATTTCATCACCTCTCCTGAAGTGAGCCAGATGTTTGGGGAG                         ATGATTGGTGTTTGGGTTACGTGTCTGTGGGAGCAAATGGGTCAACCAAGT
genomic: CAGAAGGTGATTTCATCACCTCTCCTGAAGTGAGCCAGATGTTTGGGGAGgtaatttgat ... ccacttttagATGATTGGTGTTTGGGTTATGTGTCTGTGGGAGCAAATGGGTCAACCAAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaagagtttatcactagagaatgttttcatttttcttgctgattccacttttagATGATTGGTGTTTGGGTTATGTGTCTGTGGGAGCAAATGGGTCAACCAAGTAAAGTGAACCTAGTTGAGTTGGGTCCTGGACGAGGAACTCTCATGGCTG
                                     tgctgat  putative branch site (score: 3)
                                           ttccactttt  CT-rich tract
                    aatgttttcattttt  TA-rich tract