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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatcaagacaatgccatggcttcattttcttgtttaaaggacttgaaacagtctcttttgagccctcaaaacttattatcgtgtcaaacttgacaaatttgttttacagGCTACTTATGCCAAAGCTCCAGTACCTGCTCCAGTGAAGACACCCATTCCTGCACCACCGGTCAAGCCTCCTACTGTCACTCCAAATCCCCCTGCTCCTG

Basic information

species Vitis vinifera
transcript Vv14s0066g01790.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33402934|gb|CF208561.1|CF208561
EST:     GTCTCGGCCAATGATGAAGAATTCGGCGTACAG                         GCTACTTATGCCAAAGCTCCAGTACCTGCTCCAGTGAAGACACCCATTCCT
genomic: GTCTCGGCCAATGATGAAGAATTCGGCGTACAGgtaatatcaa ... tgttttacagGCTACTTATGCCAAAGCTCCAGTACCTGCTCCAGTGAAGACACCCATTCCT
EST: gi|110688487|gb|EE067095.1|EE067095
EST:     GTCTCGGCCAATGATGAAGAATTCGGCGTACAG                         GCTACTTATGCCAAAGCTCCAGTACCTGCTCCAGTGAAGACACCCATTCCT
genomic: GTCTCGGCCAATGATGAAGAATTCGGCGTACAGgtaatatcaa ... tgttttacagGCTACTTATGCCAAAGCTCCAGTACCTGCTCCAGTGAAGACACCCATTCCT
EST: gi|110710595|gb|EE087096.1|EE087096
EST:     GTCTCGGCCAATGATGAAGAATTCGGCGTACAG                         GCTACTTATGCCAAAGCTCCAGTACCTGCTCCAGTGAAGACACCCATTCCT
genomic: GTCTCGGCCAATGATGAAGAATTCGGCGTACAGgtaatatcaa ... tgttttacagGCTACTTATGCCAAAGCTCCAGTACCTGCTCCAGTGAAGACACCCATTCCT
EST: gi|110686807|gb|EE064863.1|EE064863
EST:     GTCTCGGCCAATGATGAAGAATTCGGCGTACAG                         GCTACTTATGCCAAAGCTCCAGTACCTGCTCCAGTGAAGACACCCATTCCT
genomic: GTCTCGGCCAATGATGAAGAATTCGGCGTACAGgtaatatcaa ... tgttttacagGCTACTTATGCCAAAGCTCCAGTACCTGCTCCAGTGAAGACACCCATTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttgagccctcaaaacttattatcgtgtcaaacttgacaaatttgttttacagGCTACTTATGCCAAAGCTCCAGTACCTGCTCCAGTGAAGACACCCATTCCTGCACCACCGGTCAAGCCTCCTACTGTCACTCCAAATCCCCCTGCTCCTG
                                 acttgac  putative branch site (score: 4)
                                           tttgtttt  putative PPT
           tcaaaacttattat  TA-rich tract