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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcctcacttcctcctccactcatcactgctaagttctcaatacaaatatatatgcagccattcacttacagtatgttcttgttcttgcagATGGGGATATGGAAGAAGGCCAATTTGATATTCCTGTTCTTTCTTCTAAGGAAACTAATTCTTCCCTTCTACTCATTCACACTCTTCTGTATCATACTTC

Basic information

species Vitis vinifera
transcript Vv14s0066g01730.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01730.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G04480.1 (Glycine max), 3'ss of exon 3
----gtttcctcacttcctcctccactcatcactgctaagttctcaatacaaata--tatatgcagccattc-acttacagtatgttcttgttct-tgcagATGGGGATATGGAAGAAGGCCAATTTGATATTCCTGTTCTTTCTTCTAAGGAAACTAATTCTTCCCTTCTACTCATTCACACTCTTCTGTATCATACTTC
     ||  |  |||| |   | ||  ||    |  |    |||   ||||| ||  | ||| |||   |   | ||    | |||| || |||| |||||||     ||||||||||||| ||||| |||||  ||||||| ||  | |||||||| || |||||||||||||| |||||  | || || |||||||| |
caaacttatcatactttcaa-tgcatacactgtttattcaatctttgtacaattaaatgtatacagttttctgaattcttatttgtttttcttctatgcagATATCAGTATGGAAGAAGGCTAATTTAATATTTTTGTTCTTCCTGTTGAGGAAACTTATACTTCCCTTCTACTCCTTCACCTTGTTTTGCATCATACTAC

upper sequence: Vv14s0066g01730.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G01560.1 (Glycine max), 3'ss of exon 3
----gtttcctcact-tcctcctccactcatcactgctaagttctcaatacaaatatatatgcagccattc-acttacagtatgttcttgttct-tgcagATGGGGATATGGAAGAAGGCCAATTTGATATTCCTGTTCTTTCTTCTAAGGAAACTAATTCTTCCCTTCTACTCATTCACACTCTTCTGTATCATACTTC
     ||  |  ||| ||      ||  ||  |||       |||   ||  | || || |  ||   |   | ||    | || | || | || |||||||     | ||||||||| | |||||||||||  ||||||| ||  | |||||||| || || ||||||||||| ||||| || || || |||||||| |
caaacttatcatactatcaaaacgcatacactacttacccagtctttgtattattaaatgtatagttttctgaattcttatttgcttttatcctatgcagATATCAGTCTGGAAGAAGACGAATTTGATATTTTTGTTCTTCCTATTGAGGAAACTTATACTCCCCTTCTACTCCTTCACCCTGTTTTGCATCATACTAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaatacaaatatatatgcagccattcacttacagtatgttcttgttcttgcagATGGGGATATGGAAGAAGGCCAATTTGATATTCCTGTTCTTTCTTCTAAGGAAACTAATTCTTCCCTTCTACTCATTCACACTCTTCTGTATCATACTTC
                           cacttac  putative branch site (score: 2)
                                        ttcttgttctt  putative PPT
     tacaaatatatat  TA-rich tract