Sequence
atgc intronic sequence ATGC exonic sequencegtcttgccatttaagatcaacttcttacttgaaatagaatttaatttaatattcaagaatgagattataataattatgaatctatggtctgaatatctttgtagATTGAGCTGACTGCGCCTAGAGAAGTAGCAAGCCAATGCCCCCTCAAATCTTTCAAGTTCTACAAGACAAAAGAGGTTGCAACTGGGTTCTATGATATCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G01480.1 (Glycine max), 3'ss of exon 3
gtcttgccatttaagatcaacttcttacttgaaatagaatttaatttaatattcaagaatgagattataataattatgaatctatggt--ctgaatatctttgtagATTGAGCTGACTGCGCCTAGAGAAGTAGCAAGCCAATGCCCCCTCAAATCTTTCAAGTTCTACAAGACAAAAGAGGTTGCAACTGGGTTCTATGATATCA
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---ttac--tccatgttctgataatcgtgaagattatttttttaagagataatcaaga-tgatatttatcttttcgtggaactgtcatacatgcatatatatacagATTGAACTCATCGCACCAAGAGAAGTTGCAAGCCAATGCCCTCTCAAATCTTTCAAGTTCTACAAGACAAAGGAAATTCCCACTGGCTTCTTTGAGATCA
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G01470.1 (Glycine max), 3'ss of exon 3
gtcttgccatttaagatca-acttcttacttgaaatagaatttaatttaatattcaagaatgagattataataattatgaatctatggtctgaatatctttgtagATTGAGCTGACTGCGCCTAGAGAAGTAGCAAGCCAATGCCCCCTCAAATCTTTCAAGTTCTACAAGACAAAAGAGGTTGCAACTGGGTTCTATGATATCA
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--aatacacataaaaattatgcctttttatttacttaatcttgtgataattaatcaagaagatatttaacatgtcgtggaattttca---tacatgtttatatagATTGAACTCATCGCACCAAGAGAAGTTGCAAGGCAATGCCCTCTCAAATCTTTCAAATTCTACAAGACAAAGGAAATTCCCACTGGCTTCTTTGAGATTA
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G04410.1 (Glycine max), 3'ss of exon 3
gtcttgccatttaagatcaa--cttcttacttga--aatagaatttaatttaatattcaagaatgagattataataattatgaatctatggtctgaatatctttgtagATTGAGCTGACTGCGCCTAGAGAAGTAGCAAGCCAATGCCCCCTCAAATCTTTCAAGTTCTACAAGACAAAAGAGGTTGCAACTGGGTTCTATGATATCA
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----tgc-acataaaatcatgcctttttatttactcaacacgttgtgataaactgataatcaagaagatattta-acttgtggaattgtcgt--gcatgtttatatagATTGAACTCATCGCACCAAGAGAAGTTGCAAGCCAATGCCCACTAAGATCTTTCAAGTTCTACAAGACAAAGGAAATTCCCACTGGCTTCTTTGAGATCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717077|gb|FC066549.1|FC066549EST: TTCAGTTCATGATACATGATTGGATTGATCATATGGAGGATACCCAGCAG ATTGAGCTGACTGCGCCTAGAGAAGTAGCAAGCCAATGCCCCCTCAAATCT
genomic: TTCAGTTCATGATACATGATTGGATTGATCATATGGAGGATACCCAGCAGgtcttgccat ... atctttgtagATTGAGCTGACTGCGCCTAGAGAAGTAGCAAGCCAATGCCCCCTCAAATCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattcaagaatgagattataataattatgaatctatggtctgaatatctttgtagATTGAGCTGACTGCGCCTAGAGAAGTAGCAAGCCAATGCCCCCTCAAATCTTTCAAGTTCTACAAGACAAAAGAGGTTGCAACTGGGTTCTATGATATCA
tatcttt CT-rich tract
aatgagattataataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcttgccatttaagatcaacttcttacttgaaatagaatttaatttaatattcaagaatgagattataataattatgaatctatggtctgaatatctttgtagATTGAGCTGACTGCGCCTAGAGAAGTAGCAAGCCAATGCCCCCTCAAATCTTTCAAGTTCTACAAGACAAAAGAGGTTGCAACTGGGTTCTATGATATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG