1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aggacttgtacaagctaatcctcttaaaataatatattctcatatatacccttgtcattgactgcagctgagatcttcctggggcattgcatttctgcagTGTTGAAGAGGATATGGTGGATGGCTTCCCATACGAAGTGCCTGAAGAATACCAAAACATGCCTCTCTTGAAGGGGAGGGCAACCGTGGATATGAAGGTC
species | Vitis vinifera |
transcript | Vv14s0066g01410.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAGATGCGATTGCTCCTAAACAAAAAGAGCTGCTTCAATATGTTGGAGA TGTTGAAGAGGATATGGTGGATGGCTEST: gi|351034441|gb|FQ463254.1|FQ463254
genomic: AGAGATGCGATTGCTCCTAAACAAAAAGAGCTGCTTCAATATGTTGGAGAgtgagtagca ... atttctgcagTGTTGAAGAGGATATGGTGGATGGCT
EST: AGAGATGCGATTGCTCCTAAACAAAAAGAGCTGCTTCAATATGTTGGAGA TGTTGAAGAGGATATGGTGGATGGCTTCCCCATACEST: gi|349826215|gb|FQ416020.1|FQ416020
genomic: AGAGATGCGATTGCTCCTAAACAAAAAGAGCTGCTTCAATATGTTGGAGAgtgagtagca ... atttctgcagTGTTGAAGAGGATATGGTGGATGGCTTCCC-ATAC
EST: AGAGATGCGATTGCTCCTAAACAAAAAGAGCTGCTTCAATATGTTGGAGA TGTTGAAGAGGATATGGTGGATGGCTTCCCCTACGAAGTGCCTGAAGAATA
genomic: AGAGATGCGATTGCTCCTAAACAAAAAGAGCTGCTTCAATATGTTGGAGAgtgagtagca ... atttctgcagTGTTGAAGAGGATATGGTGGATGGCTTCCCATACGAAGTGCCTGAAGAATA
atacccttgtcattgactgcagctgagatcttcctggggcattgcatttctgcagTGTTGAAGAGGATATGGTGGATGGCTTCCCATACGAAGTGCCTGAAGAATACCAAAACATGCCTCTCTTGAAGGGGAGGGCAACCGTGGATATGAAGGTC
cattgac putative branch site (score: 3)
catttct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggacttgtacaagctaatcctcttaaaataatatattctcatatatacccttgtcattgactgcagctgagatcttcctggggcattgcatttctgcagTGTTGAAGAGGATATGGTGGATGGCTTCCCATACGAAGTGCCTGAAGAATACCAAAACATGCCTCTCTTGAAGGGGAGGGCAACCGTGGATATGAAGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - -acaagct
- - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - cccttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgcag