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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgctaagcccagacaaatccacttctgagacacttctaagactccctgaaactaaccaccagtcctttttctggcaatcgcttctgcagATAAGTGGTGAACTCAGTGCAAAAATGCCAAGCACCAAGCCAACA

Basic information

species Vitis vinifera
transcript Vv14s0066g01060.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161706245|gb|FC055437.1|FC055437
EST:     CAGAAACTCCGACTGCCGGAGATTCACTTTATAGCAGCAAACAGGATTCG                         ATAAGTGGTGAACTCAGTGCAAAAATGCCAAGCACCAAGCCAACA
genomic: CAGAAACTCCGACTGCCGGAGATTCACTTTATAGCAGCAAACAGGATTCGgtaagttgct ... gcttctgcagATAAGTGGTGAACTCAGTGCAAAAATGCCAAGCACCAAGCCAACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaagactccctgaaactaaccaccagtcctttttctggcaatcgcttctgcagATAAGTGGTGAACTCAGTGCAAAAATGCCAAGCACCAAGCCAACA
               aactaac  putative branch site (score: 1)
                                           tcgcttct  putative PPT
              aaactaa  TA-rich tract