Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaacttctaaacctaataattgaatttaaccaaatggctggcacttcctagtatgctgtgtttttttgctactacaatgttatcttattccattgtgttccagGGGATGCTCGCCTTGCAAGAAATGTGAAGAATAAAGTTTTCTCCTTTGATCTTGTCTCAAGTGATCCTTCAGTGATTGTTTGTGATATGTCAAAT

Basic information

species Vitis vinifera
transcript Vv14s0066g00390.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g00390.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM5G876003_T03 (Zea mays), 3'ss of exon 4
gtgagaacttcta-aacctaataattgaatttaaccaaatggctggcacttcctagtatgctgtgtttttttgctactacaatgtt----atcttattccattgtgttccagGGGATGCTCGCCTTGCAAGAAATGTGAAGAATAAAGTTTTCTCCTTTGATCTTGTCTCAAGTGATCCTTCAGTGATTGTTTGTGATATGTCAAAT
      | |  ||    ||  ||  ||  | |      | |  |    ||||||  |||    | || ||||  |    || |  |    ||  |||||   | | |||||||  ||||     |||||| |||| ||||||| || ||||||||| ||||||| || |||  ||| ||||||||||||| |||||||||| |  ||
------attcttacggtcttgtagctggttctttttgcaagttt----cttcctgttatatctttttattttcttggctcagttatgagaatactattca--tattttccagGCAATGCAGCAGTTGCAAAAAATCTGAAGAACAAGGTTTTCTCCATTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCAT

upper sequence: Vv14s0066g00390.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G40530.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgagaacttctaaaccta-ataattgaatttaaccaaatggctggcacttcctagtatgctgtgtttttttgctactacaatgttatcttattccattgtgttccagGGGATGCTCGCCTTGCAAGAAATGTGAAGAATAAAGTTTTCTCCTTTGATCTTGTCTCAAGTGATCCTTCAGTGATTGTTTGTGATATGTCAAAT
||||||| |||| | |||  ||   |  || | ||    || |||       ||   ||  ||| |   | |      ||| |  |||            |||  |||| |||||  |  |||| | || ||||||||| ||||||||||||||||||||||||||||   | || || || ||||  || ||||||||||||
gtgagaatttcttatcctgtattgctatatcttactttttgcctg-------ctgaaat--tgtatcactctatcg--acactaatat------------tgtctcagGTGATGCAAGGATTGCTAAAAGTGTGAAGAACAAAGTTTTCTCCTTTGATCTTGTCTCAAAGAACCCCTCTGTTATTGCCTGCGATATGTCAAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71859017|gb|DT008072.1|DT008072
EST:     ATGGCTAAAGGATCACAGCCCTTCTTTGATTGTGGCTGATTTTGGATGCG                         GGGATGCTCGCCTTGCAAGAAATGTGAAGAATAAAGTTTTCTCCTTTGATC
genomic: ATGGCTAAAGGATCACAGCCCTTCTTTGATTGTGGCTGATTTTGGATGCGgtgagaactt ... tgtgttccagGGGATGCTCGCCTTGCAAGAAATGTGAAGAATAAAGTTTTCTCCTTTGATC
EST: gi|110400512|gb|EC967076.1|EC967076
EST:     ATGGCTAAAGGATCACAGCCCTTCTTTGATTGTGGCTGATTTTGGATGCG                         GGGATGCTCGCCTTGCAAGAAATGTGAAGAATAAAGTTTTCTCCTTTGATC
genomic: ATGGCTAAAGGATCACAGCCCTTCTTTGATTGTGGCTGATTTTGGATGCGgtgagaactt ... tgtgttccagGGGATGCTCGCCTTGCAAGAAATGTGAAGAATAAAGTTTTCTCCTTTGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtatgctgtgtttttttgctactacaatgttatcttattccattgtgttccagGGGATGCTCGCCTTGCAAGAAATGTGAAGAATAAAGTTTTCTCCTTTGATCTTGTCTCAAGTGATCCTTCAGTGATTGTTTGTGATATGTCAAAT
                                       ttccatt  CT-rich tract
                           aatgttatcttatt  TA-rich tract