Sequence
atgc intronic sequence ATGC exonic sequence...gaattatgttttagatgcaaaatatcattgatgaagtgattcccaaaagaggcagatatgataataagcttgacaattttttttccttcccttttcccagAAAACTTGATCCTGACTGCAGATCACAAAACTGTCAAACTTGCGGATTTTGGCTTAGCCAGAGAAGAGTCATTAACAGAGATGATGACTGCCGAAACTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g00370.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os02g38080.1 (Oryza sativa), 3'ss of exon 4
gaattatgttttagatgcaaaatatcattgatgaagtgattcccaaaaga--ggcagatatgataataagcttga--caattttttttccttcccttttcccagAAAACTTGATCCTGACTGCAGATCACAAAACTGTCAAACTTGCGGATTTTGGCTTAGCCAGAGAAGAGTCATTAACAGAGATGATGACTGCCGAAACTGG
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---tttcttttcaga-gctatttttttgaaaaaaaatcaagccagaaatatttgtacaaataaggtttatcatgagccattgttttgtccttctgtacgtacagAGAACTTGCTGTTGACCGCAGACCAGAGAACAGTCAAGCTTGTTGACCTTGGTTTAGCAAGAGAAGAGACATTAACAGAGATGATGACTGCAGAGACAGG
upper sequence: Vv14s0066g00370.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G40540.1 (Arabidopsis thaliana), 3'ss of exon 3
gaattatgttttagatgcaaaatatcattgatgaagtgattcccaaaagaggcagatatgataataagcttgacaattttttttccttcccttttcccagAAAACTTGATCCTGACTGCAGATCACAAAACTGTCAAACTTGCGGATTTTGGCTTAGCCAGAGAAGAGTCATTAACAGAGATGATGACTGCCGAAACTGG
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-----------------gtaattgtttacaataaatcacacttcaagacattatgagttaacaataat-------gttcttatatcttcttggattgcagAGAGCTTGATCTTAACTGCGGATTACAAGACTGTTAAACTAGCAGATTTTGGTTTAGCTAGAGAAGAATCATTAACCGAGATGATGACCGCAGAAACTGG
upper sequence: Vv14s0066g00370.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G27560.1 (Arabidopsis thaliana), 3'ss of exon 3
gaattatgttttagatgcaaaatatcattgatgaagtgattcccaaaagaggcagatatgataataagcttgacaattttttttccttcccttttcccagAAAACTTGATCCTGACTGCAGATCACAAAACTGTCAAACTTGCGGATTTTGGCTTAGCCAGAGAAGAGTCATTAACAGAGATGATGACTGCCGAAACTGG
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--------------------------gtaaatggaaagaaatctaaatccgtgacttctaagtatgta-tggaaagcttatgatcttattgcatctgcagAGAATTTGATCTTATCAGCGGATCATAAGACAGTGAAACTCGCTGATTTCGGTTTAGCTAGAGAAGAATCATTAACCGAGATGATGACCGCAGAGACTGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110429607|gb|EC996103.1|EC996103EST: AATGGAATGCTTACATTCTCATGGGATCATACATCGTGACCTGAAACCTG AAAACTTGATCCTGACTGCAGATCACAAAACTGTCAAACTTGCGGATTTTG
genomic: AATGGAATGCTTACATTCTCATGGGATCATACATCGTGACCTGAAACCTGgtatgatttc ... cttttcccagAAAACTTGATCCTGACTGCAGATCACAAAACTGTCAAACTTGCGGATTTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaagaggcagatatgataataagcttgacaattttttttccttcccttttcccagAAAACTTGATCCTGACTGCAGATCACAAAACTGTCAAACTTGCGGATTTTGGCTTAGCCAGAGAAGAGTCATTAACAGAGATGATGACTGCCGAAACTGG
gcttgac putative branch site (score: 4)
cttgacaatttttttt CT-rich tract
ttgacaatttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaattatgttttagatgcaaaatatcattgatgaagtgattcccaaaagaggcagatatgataataagcttgacaattttttttccttcccttttcccagAAAACTTGATCCTGACTGCAGATCACAAAACTGTCAAACTTGCGGATTTTGGCTTAGCCAGAGAAGAGTCATTAACAGAGATGATGACTGCCGAAACTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - -caaaata
- - - - - - - - - - - - - - - - - - - - -cccaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataagc