1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttttcaagtcatgttctccaagttttccatcctttttgtttataattttttttaataggcatccctttttgtttattgtgacacgctaaattggttcagGTTTGTACAGAGGTGAGACCCGCTGCTGATGAAGAACTGCCATCTGCATATGTTGAGGAATTTCG
species | Vitis vinifera |
transcript | Vv14s0060g02220.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCTAGACCCAAGAACTGCCCATGTTGCTATAATTGACCACGTTAAACAA GTTTGTACAGAGGTGAGACCCGCTGCTGATGAAGAACTGCCATCTGCATATEST: gi|110386543|gb|EC951144.1|EC951144
genomic: ATCTAGACCCAAGAACTGCCCATGTTGCTATAATTGACCACGTTAAACAAgtgagttact ... attggttcagGTTTGTACAGAGGTGAGACCCGCTGCTGATGAAGAACTGCCATCTGCATAT
EST: ATCTAGACCCAAGAACTGCCCATGTTGCTATAATTGACCACGTTAAACAA GTTTGTACAGAGGTGAGACCCGCTGCTGATGAAGAACTGCCATCTGCATATEST: gi|110713063|gb|EE088666.1|EE088666
genomic: ATCTAGACCCAAGAACTGCCCATGTTGCTATAATTGACCACGTTAAACAAgtgagttact ... attggttcagGTTTGTACAGAGGTGAGACCCGCTGCTGATGAAGAACTGCCATCTGCATAT
EST: ATCTAGACCCAAGAACTGCCCATGTTGCTATAATTGACCACGTTAAACAA GTTTGTACAGAGGTGAGACCCGCTGCTGATGAAGAACTGCCATCTGCATAT
genomic: ATCTAGACCCAAGAACTGCCCATGTTGCTATAATTGACCACGTTAAACAAgtgagttact ... attggttcagGTTTGTACAGAGGTGAGACCCGCTGCTGATGAAGAACTGCCATCTGCATAT
attttttttaataggcatccctttttgtttattgtgacacgctaaattggttcagGTTTGTACAGAGGTGAGACCCGCTGCTGATGAAGAACTGCCATCTGCATATGTTGAGGAATTTCG
cgctaaa putative branch site (score: 3)
tttttgtttattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttcaagtcatgttctccaagttttccatcctttttgtttataattttttttaataggcatccctttttgtttattgtgacacgctaaattggttcagGTTTGTACAGAGGTGAGACCCGCTGCTGATGAAGAACTGCCATCTGCATATGTTGAGGAATTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - -tcatgtt
- - - - - - - - ctccaag
- - - - - - - - - - - - - -ccatcct