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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagaacctatttccctaatttcagcatctctaagccttgttgcatatatttttgtgttcttatctttaatatttgatataaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGGTGACTGTTGCATCTGTAGGGGATTCTCGATGCATATTGGACACACAGGG

Basic information

species Vitis vinifera
transcript Vv14s0060g01580.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g01580.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G38270.1 (Glycine max), 3'ss of exon 3
gcaagaacctatttccctaatttcagcatctctaagccttgttgcatatatttttgtgttcttatctttaatatttgatataaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGGTGACTGTTGCATCTGTAGGGGATTCTCGATGCATATTGGACACACAGGG
         ||  | |  | |||       |   | || | ||| |  | |    |||  ||| || | |   ||| || |      |||| ||||||||||| || ||||  ||||||||| |||||||  | ||||| || |||||||||||||| |||||||| || |||||||| || || || ||
--------gtacattcagagtttt----ctttgtatccctattggagttctccacgtgcacttttcctgatcttttaattttgcctgcagGGGAAACTTCTGGAACAACAGCTACATTTGTTCTGATTGATAGATGGACTGTTACTGTTGCATCTGTTGGGGATTCCCGTTGCATATTAGATACTCAAGG

upper sequence: Vv14s0060g01580.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G39260.1 (Glycine max), 3'ss of exon 3
gcaagaacctatttccctaatttcagcatctctaagccttgttgcatatatttttgtgttcttatctttaatatttgatataaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGGTGACTGTTGCATCTGTAGGGGATTCTCGATGCATATTGGACACACAGGG
                 ||    ||  || |      ||||   || |  | | ||  |  |||   | |   ||| || | |    |||| ||||||||||| || ||||  ||||||||| || |||| || ||||| || |||||||||||||| |||||||| || |||||||  || || |||||
----------------gtacaaacaaaatattatttgcttgcctcagacttctgtgcatgattaagctgatgttttcatttcatatgcagGGGAAACTTCTGGAACAACAGCTACATTTGTTTTGGTTGATGGATGGACTGTCACTGTTGCATCTGTTGGGGATTCCCGCTGCATATCAGATACTCAGGG

upper sequence: Vv14s0060g01580.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G29060.1 (Glycine max), 3'ss of exon 3
gcaagaacctatttccctaatttcagcatctctaagccttgttgcatatatttttgtgttcttatctttaatatttgatataaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGGTGACTGTTGCATCTGTAGGGGATTCTCGATGCATATTGGACACACAGGG
         ||  | |  | |||      |    | || | ||| |  | |     ||  ||| |||| |   | | || |      |||| |||||||| || || ||||  ||||||||| || |||| || ||||| || |||||||||||||| |||||||| || |||||||| || || || ||
--------gtacattcagagttttcttggc----atccctattggagttctccacatgcacttttcttgaccttataattttgcctgcagGGGAAACTTCAGGAACAACAGCTACATTTGTTCTGGTTGATGGATGGACTGTTACTGTTGCATCTGTTGGGGATTCCCGTTGCATATTAGATACTCAAGG

upper sequence: Vv14s0060g01580.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G41810.2 (Glycine max), 3'ss of exon 3
gcaagaacctatttccctaatttcagcatctctaagccttgttgcatatatttt---tgtgttcttatctttaatatttgatataaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGGTGACTGTTGCATCTGTAGGGGATTCTCGATGCATATTGGACACACAGGG
                 ||  | ||  || |      ||||   || | || ||   ||||| ||||   | |   ||| || | |    |||| ||||||||||| || ||||  ||||||||| || |||| || |||||  | |||||||||||||| || ||||| || |||||||| || || |||||
----------------gtacatacaaaatattctttgcttgcctcacagatcttctgtgtgtgcttaagctgatgttttaatttcatctgcagGGGAAACTTCTGGAACAACAGCTACATTTGTTTTGGTTGATGGATGGACTATCACTGTTGCATCTGTGGGAGATTCCCGCTGCATATTAGATACTCAGGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712240|gb|FC061614.1|FC061614
EST:     GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAG                         GTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG
genomic: GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacct ... taaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG
EST: gi|110687767|gb|EE065551.1|EE065551
EST:     GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAG                         GTGAAACTTCCGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACAG
genomic: GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacct ... taaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG
EST: gi|71864122|gb|DT013177.1|DT013177
EST:     GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAG                         GTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGATGGGTGGACGG
genomic: GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacct ... taaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG
EST: gi|110687916|gb|EE065868.1|EE065868
EST:     GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAG                         GTGAAACTTCCGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACAG
genomic: GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacct ... taaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG
EST: gi|161713310|gb|FC063693.1|FC063693
EST:     GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAG                         GTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGATGGGTGGACGG
genomic: GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacct ... taaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG
EST: gi|110730227|gb|EE107063.1|EE107063
EST:     GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAG                         GTGAAACTTCCGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACAG
genomic: GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacct ... taaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG
EST: gi|71861089|gb|DT010144.1|DT010144
EST:     GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAG                         GTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGATGGGTGGACGG
genomic: GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacct ... taaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG
EST: gi|110699523|gb|EE076606.1|EE076606
EST:     GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAG                         GTGAAACTTCCGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACAG
genomic: GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacct ... taaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG
EST: gi|71890427|gb|DT039482.1|DT039482
EST:     GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAG                         GTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG
genomic: GGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacct ... taaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccttgttgcatatatttttgtgttcttatctttaatatttgatataaatgacagGTGAAACTTCTGGCACGACAGTGACATTTGTTGTGATTGACGGGTGGACGGTGACTGTTGCATCTGTAGGGGATTCTCGATGCATATTGGACACACAGGG
          atatatttttgtgttc  TA-rich tract