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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgcttcttcttcaccccttcgcctgtcccatattactctttccttccatatttaaatttgttgatttaattttatgcaaccgcagGCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGGATATATTACTGAGTATTACACTAGCAATGCTTACAG

Basic information

species Vitis vinifera
transcript Vv14s0060g01280.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352765297|gb|FQ465994.1|FQ465994
EST:     TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTG                         GCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
genomic: TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTGgtgtgcttct ... gcaaccgcagGCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
EST: gi|30303742|gb|CB980536.1|CB980536
EST:     TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTG                         GCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
genomic: TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTGgtgtgcttct ... gcaaccgcagGCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
EST: gi|71865313|gb|DT014368.1|DT014368
EST:     TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTG                         GCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
genomic: TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTGgtgtgcttct ... gcaaccgcagGCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
EST: gi|30299286|gb|CB976080.1|CB976080
EST:     TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTG                         GCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
genomic: TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTGgtgtgcttct ... gcaaccgcagGCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
EST: gi|71861591|gb|DT010646.1|DT010646
EST:     TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTG                         GCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
genomic: TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTGgtgtgcttct ... gcaaccgcagGCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
EST: gi|110723031|gb|EE099877.1|EE099877
EST:     TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTG                         GCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
genomic: TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTGgtgtgcttct ... gcaaccgcagGCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
EST: gi|30306301|gb|CB983095.1|CB983095
EST:     TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTG                         GCATCTCTTCTTCTGTGTATCAATTGGCTT
genomic: TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTGgtgtgcttct ... gcaaccgcagGCATCTCTTCTTCTGTGTATCAATTGGCTT
EST: gi|161713995|gb|FC063180.1|FC063180
EST:     TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTG                         GCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG
genomic: TCAGAATTCACTCTCTTTAACTTTGGAAGCACAAAGACCGTAAAGAACTGgtgtgcttct ... gcaaccgcagGCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattactctttccttccatatttaaatttgttgatttaattttatgcaaccgcagGCATCTCTTCTTCTGTGTATCAATTGGCTTGTGGGCTGGACTTGTTATTGGATATATTACTGAGTATTACACTAGCAATGCTTACAG
                                 atttaat  putative branch site (score: 4)
             ttccatatttaaattt  TA-rich tract