1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atagttttaaatatcattgaatggtaaattaatttcttcccctttaaatccctggtgagataaagagctgatcttttgggaattggttgcattgatttagGTTGTTTTGCCATATTTTAAATCAAAATTGCATTCAGTCTACAACAAGGAAAGAGAAGCAACACTTCAAGCTAGTTTATGGGGTCATGGTGATGAAAGAT
species | Vitis vinifera |
transcript | Vv14s0036g01130.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCACTCTGGATTAGAAAAGTATCAAAAACGCCTCTCGGTTTTATTTCTG GTTGTTTTGCCATATTTTAAATCAAAATTGCATTCAGTCTACAACAAGGAAEST: gi|110380404|gb|EC945667.1|EC945667
genomic: ATCACTCTGGATTAGAAAAGTATCAAAAACGCCTCTCGGTTTTATTTCTGgtacaatcta ... attgatttagGTTGTTTTGCCATATTTTAAATCAAAATTGCATTCAGTCTACAACAAGGAA
EST: ATCACTCTGGATTAGAAAAGTATCAAAAACGCCTCTCGGTTTTATTTCTG GTTGTTTTGCCATATTTTAAATCAAAATTGCATTCAGTCTACAACAAGGAAEST: gi|294965129|gb|GW836960.1|GW836960
genomic: ATCACTCTGGATTAGAAAAGTATCAAAAACGCCTCTCGGTTTTATTTCTGgtacaatcta ... attgatttagGTTGTTTTGCCATATTTTAAATCAAAATTGCATTCAGTCTACAACAAGGAA
EST: ATCACTCTGGATTAGAAAAGTATCAAAAACGCCTCTCGGTTTTATTTCTG GTTGTTTTGCCATATTTTAAATCAAAATTGCATTCAGTCTACAACAAGGAAEST: gi|71859428|gb|DT008483.1|DT008483
genomic: ATCACTCTGGATTAGAAAAGTATCAAAAACGCCTCTCGGTTTTATTTCTGgtacaatcta ... attgatttagGTTGTTTTGCCATATTTTAAATCAAAATTGCATTCAGTCTACAACAAGGAA
EST: ATCACTCTGGATTAGAAAAGTATCAAAAACGCCTCTCGGTTTTATTTCTG GTTGTTTTGCCATATTTTAAATCAAAATTGCATTCAGTCTACAACAAGGAA
genomic: ATCACTCTGGATTAGAAAAGTATCAAAAACGCCTCTCGGTTTTATTTCTGgtacaatcta ... attgatttagGTTGTTTTGCCATATTTTAAATCAAAATTGCATTCAGTCTACAACAAGGAA
aaatccctggtgagataaagagctgatcttttgggaattggttgcattgatttagGTTGTTTTGCCATATTTTAAATCAAAATTGCATTCAGTCTACAACAAGGAAAGAGAAGCAACACTTCAAGCTAGTTTATGGGGTCATGGTGATGAAAGAT
cattgat putative branch site (score: 4)
attgattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagttttaaatatcattgaatggtaaattaatttcttcccctttaaatccctggtgagataaagagctgatcttttgggaattggttgcattgatttagGTTGTTTTGCCATATTTTAAATCAAAATTGCATTCAGTCTACAACAAGGAAAGAGAAGCAACACTTCAAGCTAGTTTATGGGGTCATGGTGATGAAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - -tgaatgg
- - - - - - - - - - - - -aaattaa
- - - - - - - - - - - - - - - - - tcttccc
- - - - - - - - - - - - - - - - - - - - - - - - tccctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgc