1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtgttgatttctagttgtactcttctgactaagaaaataaaacaatcttatgacaatatttaacccttggaccttataaaatccattgtgtgtcttttagGTCCACATCGCTCTAGTTGGTCTTGCTATTTCTTTCCTGAAACATCCCAAGAGTGTCAAGACCGAGCATTTGAGCTTATGGGGACCAAGGAAGCATGGGA
species | Vitis vinifera |
transcript | Vv14s0036g01060.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTCCTTGTTACAAACTATTATAATCGAGCTGACCATGATGGTTGTAAAG GTCCACATCGCTCTAGTTGGTCTTGCTATTTCTTTCCTGAAACATCTCAAGEST: gi|34543598|gb|CF511830.1|CF511830
genomic: GGTCCTTGTTACAAACTATTATAATCGAGCTGACCATGATGGTTGTAAAGgtataaattg ... tgtcttttagGTCCACATCGCTCTAGTTGGTCTTGCTATTTCTTTCCTGAAACATCCCAAG
EST: GGTCCTTGTTACAAACTATTATAATCGAGCTGACCATGATGGTTGTAAAG GTCCACATCGCTCTAGTTGGTCTTGCTATTTCTTTCCTGAAACATCTCAAG
genomic: GGTCCTTGTTACAAACTATTATAATCGAGCTGACCATGATGGTTGTAAAGgtataaattg ... tgtcttttagGTCCACATCGCTCTAGTTGGTCTTGCTATTTCTTTCCTGAAACATCCCAAG
tcttatgacaatatttaacccttggaccttataaaatccattgtgtgtcttttagGTCCACATCGCTCTAGTTGGTCTTGCTATTTCTTTCCTGAAACATCCCAAGAGTGTCAAGACCGAGCATTTGAGCTTATGGGGACCAAGGAAGCATGGGA
atttaac putative branch site (score: 3)
tgtctttt putative PPT
ttataaaatccatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttgatttctagttgtactcttctgactaagaaaataaaacaatcttatgacaatatttaacccttggaccttataaaatccattgtgtgtcttttagGTCCACATCGCTCTAGTTGGTCTTGCTATTTCTTTCCTGAAACATCCCAAGAGTGTCAAGACCGAGCATTTGAGCTTATGGGGACCAAGGAAGCATGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - ttctgac
- - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - aacaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatcc