1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtgttgtattatattttctttatttttatttaatttttactttttccaaaccatttttgtaatggtgtgatcttttcctctacttggaagtttaaatcatttcactagcacgttccttaaaaatatatatttgcaataatgtagATGGAGGAGCTTAAGAAGTTGGTTGCAGAAGGAAAAATTAAGTACATTGGGTTATCTGAACCTAGCCCAGACACAATAAGGAGGGCTCATGCAGTTCATC
species | Vitis vinifera |
transcript | Vv14s0030g02020.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGTACCGATAGAGGAAACT ATGGAGGAGCTTAAGAAGTTGGTTGCAGAAGGAAAAATTAAGTACATTGGGEST: gi|110425276|gb|EC991658.1|EC991658
genomic: CAGTACCAATAGAGGAAACTgtgagtgttg ... aataatgtagATGGAGGAGCTTAAGAAGTTGGTTGCAGAAGGAAAAATTAAGTACATTGGG
EST: GGTTGACAAGTCAGTACCGATAGAGGAAACT ATGGAGGAGCTTAAGAAGTTGGTTGCAGAAGGAAAAATTAAGTACATTGGGEST: gi|33404078|gb|CF209705.1|CF209705
genomic: GGTTGACAAGTCAGTACCAATAGAGGAAACTgtgagtgttg ... aataatgtagATGGAGGAGCTTAAGAAGTTGGTTGCAGAAGGAAAAATTAAGTACATTGGG
EST: ATCTCTATTATCAACACCGGGTTGACAAGTCAGTACCGATAGAGGAAACT ATGGAGGAGCTTAAGAAGTTGGTTGCAGAAGGAAAAATTAAGTACATTGGG
genomic: ATCTCTATTATCAACACCGGGTTGACAAGTCAGTACCAATAGAGGAAACTgtgagtgttg ... aataatgtagATGGAGGAGCTTAAGAAGTTGGTTGCAGAAGGAAAAATTAAGTACATTGGG
gtttaaatcatttcactagcacgttccttaaaaatatatatttgcaataatgtagATGGAGGAGCTTAAGAAGTTGGTTGCAGAAGGAAAAATTAAGTACATTGGGTTATCTGAACCTAGCCCAGACACAATAAGGAGGGCTCATGCAGTTCATC
ttaaaaatatatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgttgtattatattttctttatttttatttaatttttactttttccaaaccatttttgtaatggtgtgatcttttcctctacttggaagtttaaatcatttcactagcacgttccttaaaaatatatatttgcaataatgtagATGGAGGAGCTTAAGAAGTTGGTTGCAGAAGGAAAAATTAAGTACATTGGGTTATCTGAACCTAGCCCAGACACAATAAGGAGGGCTCATGCAGTTCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG