Sequence
atgc intronic sequence ATGC exonic sequencegtaagtgattctcttcctggttaattacatgtcaatgctggtgatctcttgaacatgctaggtcttagtcttagtctacttaaaattttaaattttatttgaacttatatttcttctaaatgagagtgggattcttttggaaggatgactttgaaactgtattttcttgtaatatagGTGGGGGAACTTAAGAAACTAGTGGAAGAGGGAAAAATCAAATACATTGGATTATCTGAAGCCAGCCCAGACACAATAAGGAGGGCACATGCCGTTCATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g01960.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G40860.1 (Glycine max), 3'ss of exon 3
gtaagtgattctcttcctggttaattacatgtcaatgctggtgatctcttgaacatgctaggtcttagtcttagtctacttaaaattttaaattttatttgaacttatatttcttctaaatgagagtgggattcttttggaaggatgactttgaaactgtattttcttgtaatatagGTGGGGGAACTTAAGAAACTAGTGGAAGAGGGAAAAATCAAATACATTGGATTATCTGAAGCCAGCCCAGACACAATAAGGAGGGCACATGCCGTTCATC
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-------------------gttaaggatttcttcctctcaatgattt--tgatcatagtagactttatatatatacctgtgaaaatttagtaatataat-gatattatctggctt----atctcactaga----tattagatatgttatt-----aacgtttgttataatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGATTATCTGAAGCCAGCCCAGATACAATAAGGAGAGCACACGCAATTCATC
upper sequence: Vv14s0030g01960.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G43360.1 (Glycine max), 3'ss of exon 3
gtaagtgattctcttcctggttaattacatgtcaatgctggtgatctcttgaacatgctaggtcttagtcttagtctacttaaaattttaaattttatttgaacttatatttctt-ctaaatgagagtgggattcttttggaaggatgactttgaaactgtattttcttgtaatatagGTGGGGGAACTTAAGAAACTAGTGGAAGAGGGAAAAATCAAATACATTGGATTATCTGAAGCCAGCCCAGACACAATAAGGAGGGCACATGCCGTTCATC
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-------------------gttaagcgtttcttcctctagaaaaacctatcaat------gattttgatcatagtag---tatgatgttaattattatctgg-cttatctcactagctagatagtagatatattattattaa----ctagtttgata-----------tgttatatagATTGGTGAACTTAAGAAACTGGTGGAAGAGGGAAAAGTGAGGTATATTGGATTATCTGAAGCTAGTCCAGATACAATAAGGAGAGCACATGCTGTTCATC
upper sequence: Vv14s0030g01960.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G27130.1 (Glycine max), 3'ss of exon 3
gtaagtgattctcttcctggttaattacatgtcaatgctggtgatctcttgaacatgctaggtcttagtcttagtctacttaaaattttaaattttatttgaacttatatttcttctaaatgagagtgggattcttttggaaggatgactttgaaactgtattttcttgtaatatagGTGGGGGAACTTAAGAAACTAGTGGAAGAGGGAAAAATCAAATACATTGGATTATCTGAAGCCAGCCCAGACACAATAAGGAGGGCACATGCCGTTCATC
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-------------------gttaagcgtttcttcctctagaaaaacctatcagtgattttgatcatagt---agtatgatgttaattatta---ttatctgg-cttatctcacttgcta--gatagtagatatatt--------attatt----aactagtttgttatgttatatagATTGGTGAACTTAAGAAACTGGTGGAAGAGGGAAAAGTGAGGTATATTGGATTATCTGAAGCTAGTCCAGATACAATAAGGAGAGCACATGCTGTTCATC
upper sequence: Vv14s0030g01960.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G40880.4 (Glycine max), 3'ss of exon 4
gtaagtgattctcttcctggttaattacatgtcaatgctggtgatctcttgaacatgctaggtcttagtcttagtctacttaaaattttaaattttatttgaacttatatttcttctaaatgagagtgggattcttttggaaggatgactttgaaactgtattttcttgtaatatagGTGGGGGAACTTAAGAAACTAGTGGAAGAGGGAAAAATCAAATACATTGGATTATCTGAAGCCAGCCCAGACACAATAAGGAGGGCACATGCCGTTCATC
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gttggggatccttcttctaatacac--cttttaactacttgaaatgtatt--atatacttgttact--ttttagt--------------acatattctgtcatcatgtgactcatctcactagacactagtcactagtcacatgtcaat-----aagtttgttctattgt--tttagGTGGGTGAACTTAAGAAACTTGTGGAAGAGGGTAAAGTGAAGTATATAGGGTTATCTGAAGCGAGTCCAGATACAATAAGAAGAGCACATGCAGTTCATC
upper sequence: Vv14s0030g01960.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G40870.1 (Glycine max), 3'ss of exon 3
gtaagtgattctcttcctggttaattacatgtcaatgctggtgatctcttgaacatgctaggtcttagtcttagtctacttaa-aattttaaattttatttgaacttatatttcttctaaatgagagtgggattcttttggaaggatgact--ttgaaactgtattttcttgtaatatagGTGGGGGAACTTAAGAAACTAGTGGAAGAGGGAAAAATCAAATACATTGGATTATCTGAAGCCAGCCCAGACACAATAAGGAGGGCACATGCCGTTCATC
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-------------------------------------------------------------gttaaggatttcttcctctcaatgattttgatcatagtatgatgctat-tatctggcttatctcactaga----tactagatatattactaataaaaaagttaatttgttatataatagGTGGGTGAACTTAAGAAACTGGTGGAGGAGGGCAAAGTGAGGTATATAGGGTTATCTGAAGCCAGCTCAGATACAATAAGGAGAGCGCACGCAGTTCATCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30253253|gb|CB970804.1|CB970804EST: ACTTGTATTATCAGCATCGTGTGGATACATCAGTACCTATAGAGGACACT GTGGGGGAACTTAAGAAACTAGTGGAAGAGGGAAAAATCAAATACATTGGA
genomic: ACTTGTATTATCAGCATTGTGTGGATACATCAGTACCTATAGAGGACACTgtaagtgatt ... tgtaatatagGTGGGGGAACTTAAGAAACTAGTGGAAGAGGGAAAAATCAAATACATTGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agagtgggattcttttggaaggatgactttgaaactgtattttcttgtaatatagGTGGGGGAACTTAAGAAACTAGTGGAAGAGGGAAAAATCAAATACATTGGATTATCTGAAGCCAGCCCAGACACAATAAGGAGGGCACATGCCGTTCATC
tattttctt CT-rich tract
tattttcttgtaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtgattctcttcctggttaattacatgtcaatgctggtgatctcttgaacatgctaggtcttagtcttagtctacttaaaattttaaattttatttgaacttatatttcttctaaatgagagtgggattcttttggaaggatgactttgaaactgtattttcttgtaatatagGTGGGGGAACTTAAGAAACTAGTGGAAGAGGGAAAAATCAAATACATTGGATTATCTGAAGCCAGCCCAGACACAATAAGGAGGGCACATGCCGTTCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG