Sequence
atgc intronic sequence ATGC exonic sequence...tttaatgaattgaatgtggaatcgctgattcttctgtcatgcaggcccactattttatatggcatctgactgttttccttggatatctgcataaacctagGTGGGTGCAGATAAAAATTTACTTGTGAAGGATCATACTCACACGTTCGTAAACAAAGGGGGTCAAATTGGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G30220.1 (Glycine max), 3'ss of exon 3
--------------------------------------tttaatgaattgaatgtggaatcgctgattcttct-----gtcatgcaggcc----------cactattttatatg-gcatctgactgttttccttggatatctgcataaacctagGTGGGTGCAGATAAAAATTTACTTGTGAAGGATCATACTCACACGTTCGTAAACAAAGGGGGTCAAATTGGTG
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gtaagctgtttttacttccagtcatggtgtgcattcttcttcatctctaaaccctgtactcttcctctctcttttttggccatgaaacctgtaccattgactttattttccatgtgcatttgataactt--cttcaatacttggatga--ctagGTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTTAACAAAGGGGGTCAAATTGGTG
upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G37170.1 (Glycine max), 3'ss of exon 3
-----------------------------------------------tttaatgaat-tgaatgtggaatcgctgattct-tctgtcatgcaggcc-cactattttatatggcatctgactgttttccttggatatctgcataaacctagGTGGGTGCAGATAAAAATTTACTTGTGAAGGATCATACTCACACGTTCGTAAACAAAGGGGGTCAAATTGGTG
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gtaagctgtttttacttcatctctaaaacctgttttcttcttccctcttttttggccatgaaacctgtactattgactttatttttcgtgtacattgtatctgtccatttaataact---tctacttcttcaatgcttggatga--ctagGTGGGTGCGGATAACAATCTACTTGTAAAGGATCACACTCACACTTTTGTTAACAAAGGGGGTCAAATTGGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cccactattttatatggcatctgactgttttccttggatatctgcataaacctagGTGGGTGCAGATAAAAATTTACTTGTGAAGGATCATACTCACACGTTCGTAAACAAAGGGGGTCAAATTGGTG
atctgac putative branch site (score: 3)
tattttatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttaatgaattgaatgtggaatcgctgattcttctgtcatgcaggcccactattttatatggcatctgactgttttccttggatatctgcataaacctagGTGGGTGCAGATAAAAATTTACTTGTGAAGGATCATACTCACACGTTCGTAAACAAAGGGGGTCAAATTGGTG
- - - - - -gaatgtg
- - - - - - - - - - - - ctgattc
- - - - - - - - - - - - - - - - - - tcatgca
- - - - - - - - - - - - - - - - - - - - - - -cccacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatctg