Sequence
atgc intronic sequence ATGC exonic sequencegtaagtatcctcgaattttctggtcattttagtatgtgggtcgttgagatttttaccggtttaaatgggttttcttgcttttctatgtttgatcatgatagGTATAGGCAAAAGCACAAGAGAGTTAACATTAGAGCAGTGAAGCATTGGTGCAGACAGATCTTGAGAGGGCTTCTCTACCTCCATAGCCATGACCCACCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g01660.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G40550.1 (Glycine max), 3'ss of exon 1
gtaagtatcctcgaattttctggtcattttagtatgtgggtcgt------tgagatttttaccggtttaaatgggttttcttgcttttctatgtttg--------atcatgatagGTATAGGCAAAAGCACAAGAGAGTTAACATTAGAGCAGTGAAGCATTGGTGCAGACAGATCTTGAGAGGGCTTCTCTACCTCCATAGCCATGACCCACCT
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gtgagttccctccattttcatccttattata-tatgatcattatccattttgagcttttgagaagttgttttatttttttcttcttttatttatttgttttaattatcacaatagGTATAGGCAAAAGCACAAGAGAGTTAACATTAGGGCAGTGAAGCATTGGTGTAGACAGATCCTGAGAGGGCTTCTCTATCTTCATAGCCATGACCCACCT
upper sequence: Vv14s0030g01660.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G43210.1 (Glycine max), 3'ss of exon 3
------------------------gtaagtatcctcgaattttctggtcattttagtatgtgggtcgttgagatttttaccggtttaaatgggttttcttgcttt-tctatgtt--tgatcatgatagGTATAGGCAAAAGCACAAGAGAGTTAACATTAGAGCAGTGAAGCATTGGTGCAGACAGATCTTGAGAGGGCTTCTCTACCTCCATAGCCATGACCCACCT
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gtgagttccctccattttcaaccttttgccactcctctatattatatttgtatgatcattatcctttttgtgcttttgagaagttttgttattttttcttcttttatttattttaattatcacaatagATATAGGCAAAAGCACAAGAGAGTTAACATTAGGGCAGTGAAGCATTGGTGTAGACAAATCCTGAGAGGGCTTCTCTATCTTCATAGCCGTGACCCACCT
upper sequence: Vv14s0030g01660.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G04910.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagtatcctcgaattttctggtcattttagtatgtgggtcgttgagatttttaccggtttaaatgggttttcttgcttttctatgtttgatcatgatagGTATAGGCAAAAGCACAAGAGAGTTAACATTAGAGCAGTGAAGCATTGGTGCAGACAGATCTTGAGAGGGCTTCTCTACCTCCATAGCCATGACCCACCT
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---------gtaagattctcttgtaaacatacttt-tctgtcgttgg---tttta---gttta-------tctttaacgataacttcatttatggatacagATATAGACTCAGACATAAGAGAGTGAACATAAGAGCTATGAAGCATTGGTGCAGACAAATCTTGAGAGGCTTACATTATCTTCACAGCCATGATCCTCCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agatttttaccggtttaaatgggttttcttgcttttctatgtttgatcatgatagGTATAGGCAAAAGCACAAGAGAGTTAACATTAGAGCAGTGAAGCATTGGTGCAGACAGATCTTGAGAGGGCTTCTCTACCTCCATAGCCATGACCCACCT
gtttgat putative branch site (score: 5)
tttaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtatcctcgaattttctggtcattttagtatgtgggtcgttgagatttttaccggtttaaatgggttttcttgcttttctatgtttgatcatgatagGTATAGGCAAAAGCACAAGAGAGTTAACATTAGAGCAGTGAAGCATTGGTGCAGACAGATCTTGAGAGGGCTTCTCTACCTCCATAGCCATGACCCACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG