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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatcaaactcataactagtacttgttttctttttgtactcctttatgtcatagttacatgatttgcagtttttgtcttagGAAGTTGTTGTTCTTAAGAGGTGCTGGCTTGCTCGTTATTGGAGTTTATGTGTTCAATATGGTAAAGTGATTTTATTTTATTTATTTTTTAACATTTTTT

Basic information

species Vitis vinifera
transcript Vv14s0030g00780.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00780.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G42880.1 (Glycine max), 3'ss of exon 11
gtttgtatcaaac-tcataactagtactt--gtttt------ctttttgtactcctttatgtcatagttacatgatttgcagtttt-tgtcttagGAAGTTGTTGTTCTTAAGAGGTGCTGGCTTGCTCGTTATTGGAGTTTATGTGTTCAATATGGTAAAGTGATTTTATTTTATTTATTTTTTAACATTTTTT
||| |  |  ||| | |  | || |  ||   ||||       |||||   | | ||| || ||||||||  |||||| | ||||| | ||||||||||  |||||| | |||||||| ||||| ||||| |||||| ||||||||||||   |||                                       
gttagggtttaacgttactagtaatgttttcattttaacaatttttttaagcacttttctg-catagttatgtgattttccgttttgtctcttagGAAGAGGTTGTTTTAAAGAGGTGTTGGCTAGCTCGGTATTGGGGTTTATGTGTTCGGCATG---------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctttttgtactcctttatgtcatagttacatgatttgcagtttttgtcttagGAAGTTGTTGTTCTTAAGAGGTGCTGGCTTGCTCGTTATTGGAGTTTATGTGTTCAATATGGTAAAGTGATTTTATTTTATTTATTTTTTAACATTTTTT
                                           tttttgtctt  CT-rich tract
     ttttgta  TA-rich tract