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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagattgtctaatatatgccttgtctttgaagttgaatttgcctcatattgaagacctaatcactaaatttaagtctgtttcttctttcctttgatgcagCAAGACCTGCATTCTACAAATATATCACAATCATGTGCTGCTTGAATGCATTAGCATTGTTTGCTTGTGGGCTTACAGGAAATGGGGCTGGTTTTGGGTT

Basic information

species Vitis vinifera
transcript Vv14s0030g00750.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30131882|gb|CB917221.1|CB917221
EST:     TGGCTTCATATTGTTCATGTACCACTCACAATGGAGAGAGAGGTTACCTG                         CAAGACCTGCATTCTACAAATATATCACAATCATGTGCTGCTTGAATGCAT
genomic: TGGCTTCATATTGTTCATGTACCACTCAAAATGGAGAGAGAGGTTACCTGgtgagattgt ... tttgatgcagCAAGACCTGCATTCTACAAATATATCACAATCATGTGCTGCTTGAATGCAT
EST: gi|22012612|gb|BQ797646.1|BQ797646
EST:     TGGCTTCATATTGTTCATGTACCACTCAAAATGGAGAGAGAGGCTACCTG                         CAAGACCTGCATTCTACAAATATATCACAATCATGTGCTGCTTGAATGCAT
genomic: TGGCTTCATATTGTTCATGTACCACTCAAAATGGAGAGAGAGGTTACCTGgtgagattgt ... tttgatgcagCAAGACCTGCATTCTACAAATATATCACAATCATGTGCTGCTTGAATGCAT
EST: gi|110366928|gb|EC930848.1|EC930848
EST:     TGGCTTCATATTGTTCATGTACCACTCAAAATGGAGAGAGAGGTTACCTG                         CAAGACCTGCATTCTACAAATATATCACAATCATGTGCTGCTTGAATG
genomic: TGGCTTCATATTGTTCATGTACCACTCAAAATGGAGAGAGAGGTTACCTGgtgagattgt ... tttgatgcagCAAGACCTGCATTCTACAAATATATCACAATCATGTGCTGCTTGAATG
EST: gi|110365218|gb|EC927851.1|EC927851
EST:     TGGCTTCATATTGTTCATGTACCACTCAAAATGGAGAGAGAGGTTACCTG                         CAAGACCTGCATTATACAAATATATCACAATCATGTGCTGCTTGAATGCAT
genomic: TGGCTTCATATTGTTCATGTACCACTCAAAATGGAGAGAGAGGTTACCTGgtgagattgt ... tttgatgcagCAAGACCTGCATTCTACAAATATATCACAATCATGTGCTGCTTGAATGCAT
EST: gi|30133320|gb|CB918659.1|CB918659
EST:     TGGCTTCATATTGTTCATGTACCACTCAAAATGGAGAGAGAGGCTACCTG                         CAAGACCTGCATTCTACAAATATATCACAATCATGTGCTGCTTGAATGCAT
genomic: TGGCTTCATATTGTTCATGTACCACTCAAAATGGAGAGAGAGGTTACCTGgtgagattgt ... tttgatgcagCAAGACCTGCATTCTACAAATATATCACAATCATGTGCTGCTTGAATGCAT
EST: gi|110380174|gb|EC945419.1|EC945419
EST:     TGGCTTCATATTGTTCATGTACCACTCAAAATGGAGAGAGAGGTTACCTG                         CAAGACCTGCATTCTACAAATATATCACAATCATGTGCTGCTTGAAT
genomic: TGGCTTCATATTGTTCATGTACCACTCAAAATGGAGAGAGAGGTTACCTGgtgagattgt ... tttgatgcagCAAGACCTGCATTCTACAAATATATCACAATCATGTGCTGCTTGAAT
EST: gi|110703012|gb|EE079484.1|EE079484
EST:     TGGCTTCATATTGTTCATGTACCACTCAAAATGGAGAGAGAGGCTACCTG                         CAAGACCTGCATTCTACAAATATATCACAATCATGTGCTGCTTGAATGCAT
genomic: TGGCTTCATATTGTTCATGTACCACTCAAAATGGAGAGAGAGGTTACCTGgtgagattgt ... tttgatgcagCAAGACCTGCATTCTACAAATATATCACAATCATGTGCTGCTTGAATGCAT
EST: gi|110394639|gb|EC959842.1|EC959842
EST:     TGGCTTCATATTGTTCATGTCCCACTCAAAATGGAGAGAGAGGTTACCTG                         CAAGACCTGCATTCTACAAATATATCACAATCATGTGCTGCTTGAATGCAT
genomic: TGGCTTCATATTGTTCATGTACCACTCAAAATGGAGAGAGAGGTTACCTGgtgagattgt ... tttgatgcagCAAGACCTGCATTCTACAAATATATCACAATCATGTGCTGCTTGAATGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattgaagacctaatcactaaatttaagtctgtttcttctttcctttgatgcagCAAGACCTGCATTCTACAAATATATCACAATCATGTGCTGCTTGAATGCATTAGCATTGTTTGCTTGTGGGCTTACAGGAAATGGGGCTGGTTTTGGGTT
                             tctgtttcttctttcc  CT-rich tract
            taatcactaaatttaa  TA-rich tract