Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttatatctcaccataaattattatgttttcacccatctttaaatgtcagttattaccaattgttgtttaacccaatggtcatgccatgtgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAGGAGAGTGCCCAGAGCATTGCAACTGTTCAGGATGCTGCAGATCTTATTG

Basic information

species Vitis vinifera
transcript Vv14s0030g00740.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G30000.1 (Glycine max), 3'ss of exon 4
-------------tcttatatctcaccataaattattatgttttcacccatc---tttaaatgtcagttattaccaattg------ttgtttaacccaatggtcatgccatgtgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAGGAGAGTGCCCAGAGCATTGCAACTGTTCAGGATGCTGCAGATCTTATTG
             |   |||  | |  ||  |||    ||  || |   | |   | | | | | |  || || | |||       |||||       |   | |       ||   | ||||| ||||| |||||||| || |||||||||||||||||||  || ||||| || ||||| ||||||||  |||| |||||||| |||||||||||||| |
gtaaagaacatcttgccatacattagaattgattcgcttggatttatttagcaaatctgagtataaactaatagccattaatttgattgttctgatttacttttacatggcatgccctttagGTTGAGATTGTGATGGGGCTTGAGGAGGAATTTGGTATCACCGTAGAAGAAGATAGTGCACAGAGCATCTCAACAGTTCAGGAAGCTGCAGATCTTATCG

upper sequence: Vv14s0030g00740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G40250.1 (Glycine max), 3'ss of exon 3
-----------tcttatatctcaccataaattattatgttttcac--ccatctt-taaatgtcagttattaccaat----tgttgtttaacccaatggtcatg-----ccat--------gtgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAGGAGAGTGCCCAGAGCATTGCAACTGTTCAGGATGCTGCAGATCTTATTG
             | ||  |    |||||  ||||    ||| |    ||| |  || || | |  | ||||   |    ||    || | | || | |  ||     || |         ||   | ||||| ||||||||||||| ||| ||||| | |||||||||     | |||||||| ||||| |||||||| || || |||||||||||||||||||||||||
gtaatcagaaacatcatgcccacacataacatatttccgtttaatgttcatttcctatatctaacatcttacatgtgccatgacacttgatcgaacgattgtggatttcctttaaataccatgccttgtagGTTGAGATCGTGATGGCACTTGAGGAAGCATTTGGTATTGCCATTGAAGAGGACAGTGCACAGAGCATCGCTACGGTTCAGGATGCTGCAGATCTTATTG

upper sequence: Vv14s0030g00740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G42860.1 (Glycine max), 3'ss of exon 3
----------------------------tcttatatctcaccataaattatt--atgttttcacccatctttaaatgtcagttattaccaattgt-tgtttaacccaatggtcatgccatgtgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAGGAGAGTGCCCAGAGCATTGCAACTGTTCAGGATGCTGCAGATCTTATTG
                             | ||| || ||  |    | |||  || | |  |||    |  | ||| || | |     |||||  || ||       |  |      |  ||   | ||||| ||||||||||||| ||| ||||| | |||||||||     | |||||||| || || |||||||| || ||||||||||||||||||||||||||||
gtaatcagaaacatcatcccagcgcataacatatttcccattaatgttcatttcatatatctaccatcttacatatgcca-tgacacttaattgaatgattgtgggtttcctttaaatacatgccttctagGTTGAGATCGTGATGGCACTTGAGGAAGCATTTGGTATTGCCATTGAAGAGGACAGCGCACAGAGCATCGCTACTGTTCAGGATGCTGCAGATCTTATTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110703628|gb|EE080639.1|EE080639
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110690557|gb|EE067761.1|EE067761
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|351023786|gb|FQ448337.1|FQ448337
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|37189640|gb|CF608989.1|CF608989
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110418580|gb|EC984740.1|EC984740
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|351054703|gb|FQ462733.1|FQ462733
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|71890528|gb|DT039583.1|DT039583
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|352782663|gb|FQ476743.1|FQ476743
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTGGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|37189424|gb|CF608773.1|CF608773
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110426572|gb|EC992985.1|EC992985
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCTGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110420937|gb|EC987224.1|EC987224
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|77578588|gb|DV218084.1|DV218084
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110418958|gb|EC985142.1|EC985142
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCTGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|22010751|gb|BQ795785.1|BQ795785
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|351017647|gb|FQ436000.1|FQ436000
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110402906|gb|EC963763.1|EC963763
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110721505|gb|EE098583.1|EE098583
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110405649|gb|EC971193.1|EC971193
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCTGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|34362002|gb|CF403587.1|CF403587
EST:     AATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: AATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110692408|gb|EE071622.1|EE071622
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|32460483|gb|CD801657.1|CD801657
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110425696|gb|EC992086.1|EC992086
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110363114|gb|EC926684.1|EC926684
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|34545746|gb|CF513978.1|CF513978
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|77579866|gb|DV218808.1|DV218808
EST:     ATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: ATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110428624|gb|EC995101.1|EC995101
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|349824106|gb|FQ417493.1|FQ417493
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|351026172|gb|FQ428184.1|FQ428184
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|71870545|gb|DT019600.1|DT019600
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110685716|gb|EE062678.1|EE062678
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|34320048|gb|CF372802.1|CF372802
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110426513|gb|EC992926.1|EC992926
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|34362606|gb|CF404191.1|CF404191
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|77585712|gb|DV221948.1|DV221948
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110399703|gb|EC966224.1|EC966224
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110709753|gb|EE085487.1|EE085487
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|351053253|gb|FQ459121.1|FQ459121
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|30296449|gb|CB973243.1|CB973243
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|71872899|gb|DT021954.1|DT021954
EST:     AAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: AAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110407160|gb|EC972757.1|EC972757
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCTGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110386901|gb|EC951534.1|EC951534
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110696670|gb|EE073000.1|EE073000
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110728807|gb|EE104698.1|EE104698
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|71875335|gb|DT024390.1|DT024390
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110419963|gb|EC986223.1|EC986223
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCTGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110702009|gb|EE080229.1|EE080229
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110716662|gb|EE091841.1|EE091841
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|37188232|gb|CF607581.1|CF607581
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|349827149|gb|FQ421422.1|FQ421422
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|37189253|gb|CF608602.1|CF608602
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110688051|gb|EE066163.1|EE066163
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|110715836|gb|EE094341.1|EE094341
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|87584028|gb|DY473342.1|DY473342
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
EST: gi|351023673|gb|FQ448224.1|FQ448224
EST:     TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACG                         GTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG
genomic: TTACTGGTGAATCAAAATTTGCAGCGCTTGGAGCCGATTCTCTTGATACGgtatttgaca ... tgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcagttattaccaattgttgtttaacccaatggtcatgccatgtgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAGGAGAGTGCCCAGAGCATTGCAACTGTTCAGGATGCTGCAGATCTTATTG
                     gtttaac  putative branch site (score: 3)
                                             tgttatata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcttatatctcaccataaattattatgttttcacccatctttaaatgtcagttattaccaattgttgtttaacccaatggtcatgccatgtgttatatagGTGGAGATCGTGATGGGACTAGAGGAGGAATTTGGTATCAATGTGGAAGAGGAGAGTGCCCAGAGCATTGCAACTGTTCAGGATGCTGCAGATCTTATTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - ctcacca
- - - - - - - - - - - - - - - tcaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgcc