Sequence
atgc intronic sequence ATGC exonic sequence...tttctgccctgatggtgactatggactaaggctgtgtctttcatgtaattttcttggactatagacaataatgtgtaaatgtgttatattaatggtacagGAACTAAATATTGGTGGAAGTATAGTCACATCTGCAATGGAAGAGGCATGTGGGACAAGCAGGTCTAAAATAAGGGCCATGTACAATAGCTTAGGTGATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0006g02190.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G53000.1 (Glycine max), 3'ss of exon 2
--tttctgccctgatggtgactatggactaaggctgtgtctttcatgtaattttcttggactatagac-aataatgtgtaaatgtgttatattaatggta-cagGAACTAAATATTGGTGGAAGTATAGTCACATCTGCAATGGAAGAGGCATGTGGGACAAGCAGGTCTAAAATAAGGGCCATGTACAATAGCTTAGGTGATC
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atgtttaagtttgactgtgagc---gagtataggagtctattgtatggcaataagagttattatgcactgacaaagt-tccttacattatactattgatatcagGAACTGAATATTGGTGGAAGTTTAGTCACTGCAGCACTTGAAGAGGCATGTGGAACAAATCGATTGAAAATAAGGGAGATGTTTAACAAATTTGGTGATC
upper sequence: Vv14s0006g02190.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G09960.1 (Glycine max), 3'ss of exon 9
---tttctgccctgatggtgactatggactaaggctgtgtctttcatgtaattttcttggactatagacaataatgtgtaaatgtgttatattaat-ggta-cagGAACTAAATATTGGTGGAAGTATAGTCACATCTGCAATGGAAGAGGCATGTGGGACAAGCAGGTCTAAAATAAG-GGCCATGTACAATAGCTTAGGTGATC-
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ttgttaatgtttaagtt-tgactgcgagtatagga---gtctattgtatggcaataagagttattatgcactaacaaa-gttccttttatattatttaatatcagGAACTAAATATTGGTGGAAGTTTAGTCAC---TGCAATATTTGGAACTAACAAAGTTCCTTACATTATACTATTTGACTGTTTTACTAAACCTGTTCAATCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taattttcttggactatagacaataatgtgtaaatgtgttatattaatggtacagGAACTAAATATTGGTGGAAGTATAGTCACATCTGCAATGGAAGAGGCATGTGGGACAAGCAGGTCTAAAATAAGGGCCATGTACAATAGCTTAGGTGATC
tattaat putative branch site (score: 2)
aataatgtgtaaatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttctgccctgatggtgactatggactaaggctgtgtctttcatgtaattttcttggactatagacaataatgtgtaaatgtgttatattaatggtacagGAACTAAATATTGGTGGAAGTATAGTCACATCTGCAATGGAAGAGGCATGTGGGACAAGCAGGTCTAAAATAAGGGCCATGTACAATAGCTTAGGTGATC
- tctgccc
- - - - - gatggtg
- - - - - - - - - ctatgga
- - - - - - - - - - - - - - - - - - - - tcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaataa