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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtacaatctttgccagtggccttctgtaaacatcattggtcgatgctattttttgaatgaagttatgatgttttgtatgaacccttggttttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGATTAACTACATGCTCAAAAAAG

Basic information

species Vitis vinifera
transcript Vv14s0006g01790.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0006g01790.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G18080.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatgtacaatctttgccagtggccttctgtaaaca-tcattggtcgatgctattttttgaatgaagttatgatgttttgtatgaacccttggttttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGATTAACTACATGCTCAAAAAAG
                      |  || | |||  |  |||   | | |      || ||| | |  |||  ||  |     | | |   ||      |||||||||||| ||| ||||| |||||| | |||||||| |||||||| ||  ||||| | |||||| |  ||||||
----------------------gtattatataagtaaccatatatagttatataattctgattaagattagtataataacattaagcttatga-----atgcagAGGGAAGTGGTAAAGTCAACTGGAAAGGAGTTGCTTATTACAATAGATTGATTGATTACATGGTTCAAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351041108|gb|FQ444085.1|FQ444085
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|352781654|gb|FQ468952.1|FQ468952
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|352778017|gb|FQ467070.1|FQ467070
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|71870097|gb|DT019152.1|DT019152
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|349826342|gb|FQ417839.1|FQ417839
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|349826549|gb|FQ418640.1|FQ418640
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|351055499|gb|FQ442295.1|FQ442295
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|352777870|gb|FQ466923.1|FQ466923
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|352763933|gb|FQ465383.1|FQ465383
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|351047302|gb|FQ454913.1|FQ454913
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCCG                         AGGGAACTGGGGAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|351055347|gb|FQ441945.1|FQ441945
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGGAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|352769825|gb|FQ468753.1|FQ468753
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|351019898|gb|FQ439715.1|FQ439715
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|77587229|gb|DV222748.1|DV222748
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|161712389|gb|FC061694.1|FC061694
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|352777639|gb|FQ466692.1|FQ466692
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|352768049|gb|FQ467448.1|FQ467448
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|351056118|gb|FQ453580.1|FQ453580
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGGAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|352768397|gb|FQ469573.1|FQ469573
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|351016119|gb|FQ432074.1|FQ432074
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGGAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|351043324|gb|FQ451376.1|FQ451376
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGGAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|351016022|gb|FQ431977.1|FQ431977
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|71873314|gb|DT022369.1|DT022369
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|351032857|gb|FQ461746.1|FQ461746
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGGAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|110425826|gb|EC992219.1|EC992219
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|351044375|gb|FQ452927.1|FQ452927
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGGAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|352790248|gb|FQ481447.1|FQ481447
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGGAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
EST: gi|161718844|gb|FC066359.1|FC066359
EST:     GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG                         AGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA
genomic: GAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTGgtatgtacaa ... tttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctattttttgaatgaagttatgatgttttgtatgaacccttggttttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGATTAACTACATGCTCAAAAAAG
                                            ttttcat  CT-rich tract
     tttttgaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtacaatctttgccagtggccttctgtaaacatcattggtcgatgctattttttgaatgaagttatgatgttttgtatgaacccttggttttcatgcagAGGGAACTGGGAAAGTAAACTGGGAGGGAGTTGCCTATTACAACAGGCTGATTAACTACATGCTCAAAAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT