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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgaacaccaaatctgtgtgattcctttctgttattgtttagtgattttcttttaaccatgatgctttcataaccagACAGGAGGCTACAGTGAGGACATGATTCCAACT

Basic information

species Vitis vinifera
transcript Vv14s0006g01090.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0006g01090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G089454_T01 (Zea mays), 3'ss of exon 2
gtgagtgaacaccaaatctgtgtgattcctttctgttattgtttagtgattttcttttaac-catga-tgctttcataaccagACAGGAGGCTACAGTGAGGACATGATTCCAACT
    ||   || ||| || ||     | | ||    | || | | ||| |||  ||||||  ||||  | || |  |   |||||||| |||||||||||||||||||||||||||
----gtatgcatcaactcagtcaagatacattaccatgttatctggtgttttgattttaattcatggcttctgtgctttgcagACAGGTGGCTACAGTGAGGACATGATTCCAACT

upper sequence: Vv14s0006g01090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G171060_T02 (Zea mays), 3'ss of exon 3
--gtgagtgaacaccaaatctgtgtgattcctttctgttattgtttagtgattttcttttaa-ccatga-tgctttcataaccagACAGGAGGCTACAGTGAGGACATGATTCCAACT
   ||  | ||| |        |  ||| | || |  |  ||| || ||| |||  || ||| |||||  |||| |  |   |||||||| |||||||||||||||||||||||||| 
gtatgcatcaactcactcaacttaagatgcattaccatgcttgattggtgttttgattctaatccatggctgctgtgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG

upper sequence: Vv14s0006g01090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G41170.1 (Glycine max), 3'ss of exon 2
-------------------------------gtgagtgaacaccaaatctgtgtgattcctttctgttattgtttagtgattttcttttaaccatgatgct-ttcataaccagACAGGAGGCTACAGTGAGGACATGATTCCAACT
                                | | | ||     || |  ||   |||  ||||  |||   |  || |||  | ||      || |  | || |    ||||| || |||||||||||||||||||||||||||
gtgagttgctgctgctgctgcgttgcaattttttactcaatttagaaaccctgaagttcagttctagtataact--gttattgacattggtatttggttttgtttacctgcagACTGGGGGCTACAGTGAGGACATGATTCCAACT

upper sequence: Vv14s0006g01090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G39540.1 (Glycine max), 3'ss of exon 2
-------------------------------------gtgagtgaacaccaaa--tctgtgtgattcctttctgttattgtt-tagtgattttcttttaac----cat-gatgctt-----------tcataaccagACAGGAGGCTACAGTGAGGACATGATTCCAACT
                                     |  | | ||| |  ||  ||  | |   |  || ||||||||| | |  ||   || |||| ||    ||| |||| ||           | |    ||||| || |||||||||||||||||||||||||||
gtgagttgctgcagcattgcaattttgactcaatttagaaattaaaccctgaaattcaatttctgttattactgttattgctctcatggccttgttttgacattacattgatgtttggtttttttgtttacctgcagACTGGGGGCTACAGTGAGGACATGATTCCAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctttctgttattgtttagtgattttcttttaaccatgatgctttcataaccagACAGGAGGCTACAGTGAGGACATGATTCCAACT
                            ttttaac  putative branch site (score: 2)
                                        tgctttc  putative PPT
                    tgattttcttttaa  TA-rich tract