Sequence
atgc intronic sequence ATGC exonic sequence...cctgcaaaagtcctctattatgaaaggagattgatagtgtcatctactaaaagagttatacttcctctgaaactgaattttttgctgcttgtgatcatagATGTGGAAGGTATCCACCAGAGGTCAGAACTGCCATTCCTGTTGATGGAAGGTTTGAGCAAATCGTTTTATCATGCAATGCCACATCTGATCATGGAATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0006g01030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G04540.1 (Glycine max), 3'ss of exon 3
cctgcaaaagtcctct--attatgaaaggagattgatagtgtcatctactaaaagagttatacttcctctgaaactgaattttttgctgcttg-tgatcatagATGTGGAAGGTATCCACCAGAGGTCAGAACTGCCATTCCTGTTGATGGAAGGTTTGAGCAAATCGTTTTATCATGCAATGCCACATCTGATCATGGAATT-
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-ctg-agatatcatttgaattgttaaatcttgtcctgaattacatctataagtaatatgttgtttccaat--aatgaaattcactgttgcttggtgaacgcagaTGTGGGAGATTTCCTCCTGAAGTGAGGACTGCTATTCCTGTTGATGGAAGATTTGAGCATATTGTCTTGTCCTGTAATGCAACATCGGATCATGGAATTA
upper sequence: Vv14s0006g01030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G33660.1 (Glycine max), 3'ss of exon 3
cctgcaaaagtcctctattatgaaaggagattgatagtgtcatctactaaaagagttatacttcctctga-aactgaattttttgctgcttg-tgatcatagATGTGGAAGGTATCCACCAGAGGTCAGAACTGCCATTCCTGTTGATGGAAGGTTTGAGCAAATCGTTTTATCATGCAATGCCACATCTGATCATGGAATT
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actg-agaaatcatttgc-atcgtgaaatcttgtcctgacttacggctataagtaatatgttgtttcaaataataaaattcactgttgcttggtgtacacagATGTGGGAGATTTCCTCCTGAAGTGAGGACTGCTATTCCCGTTGATGGAAGATTTGAGCATATAGTCTTGTCCTGTAATGCAACATCAGATCATGGAATT
upper sequence: Vv14s0006g01030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G37710.1 (Arabidopsis thaliana), 3'ss of exon 3
cctgcaaaagtcctctattatgaaaggagattgatagtgtcatctactaaaagagttatacttcctctgaaactgaattttttgctgcttgtgatcatagATGTGGAAGGTATCCACCAGAGGTCAGAACTGCCATTCCTGTTGATGGAAGGTTTGAGCAAATCGTTTTATCATGCAATGCCACATCTGATCATGGAATT---------
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-------------------gtaataatgaagttagtgtggcatttcttagca-atttttgtttgtttttcctctgattatttt-----ttgtatt--tagatgtggaagGTTTCCTCCCGAAGTGAGAACCGCGATTCCCGTTGATGGTAGATTTGAGCATATAGTATTATCATCGAATGCAACATCGGATCATGCGATTCTATGGATA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actaaaagagttatacttcctctgaaactgaattttttgctgcttgtgatcatagATGTGGAAGGTATCCACCAGAGGTCAGAACTGCCATTCCTGTTGATGGAAGGTTTGAGCAAATCGTTTTATCATGCAATGCCACATCTGATCATGGAATT
tactaaa putative branch site (score: 1)
aaactgaatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cctgcaaaagtcctctattatgaaaggagattgatagtgtcatctactaaaagagttatacttcctctgaaactgaattttttgctgcttgtgatcatagATGTGGAAGGTATCCACCAGAGGTCAGAACTGCCATTCCTGTTGATGGAAGGTTTGAGCAAATCGTTTTATCATGCAATGCCACATCTGATCATGGAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
cctgcaa
- - - - agtcctc
- - - - - - - - - - -gaaagga
- - - - - - - - - - - - - - - - - - - - catctac
- - - - - - - - - - - - - - - - - - - - - - - - aaaagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgct