1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...catatcccattttctaattttataattaaattccaaatttgtggtagtttgagtttatgtactacaatttttatcttatatattcaactttttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCCCAGTGATGGGACAGAGCAGACATTACTGAACGAGCTAGCTTCTTTTGAT
species | Vitis vinifera |
transcript | Vv14s0006g00630.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCCEST: gi|349817724|gb|FQ407713.1|FQ407713
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT TGGGTCTAAGATCTTCTCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCCEST: gi|33402764|gb|CF208391.1|CF208391
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCCEST: gi|26265541|gb|CA816604.1|CA816604
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: GAAAAGTACCCAGATCCCCCTT-GGGAACCCCACCTGAGAAGGCTTCAGT TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCCEST: gi|351024071|gb|FQ423494.1|FQ423494
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCCEST: gi|33404427|gb|CF210054.1|CF210054
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCCEST: gi|349826855|gb|FQ418946.1|FQ418946
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCCEST: gi|110691855|gb|EE070437.1|EE070437
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCCEST: gi|351046545|gb|FQ453161.1|FQ453161
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCCEST: gi|294966595|gb|GW837730.1|GW837730
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCCEST: gi|77577773|gb|DV217632.1|DV217632
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCCEST: gi|26261684|gb|CA812747.1|CA812747
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCTEST: gi|26262274|gb|CA813337.1|CA813337
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT TGGGTCTAAGATCTTCCCTGEST: gi|37190755|gb|CF610104.1|CF610104
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTG
EST: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAEST: gi|26263937|gb|CA815000.1|CA815000
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAA
EST: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCCEST: gi|349809187|gb|FQ398960.1|FQ398960
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCCEST: gi|349827950|gb|FQ422818.1|FQ422818
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT TGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCCEST: gi|349814904|gb|FQ410127.1|FQ410127
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
EST: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGT TGGGTCTAAGATCTTCTCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
genomic: GAAAAGTACCCAGATCCCCCTTTGGGAACCCCACCTGAGAAGGCTTCAGTgtatgtcttt ... tttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCC
agtttgagtttatgtactacaatttttatcttatatattcaactttttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCCCAGTGATGGGACAGAGCAGACATTACTGAACGAGCTAGCTTCTTTTGAT
ttcaactttttcct CT-rich tract
tttatgtactacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatcccattttctaattttataattaaattccaaatttgtggtagtttgagtttatgtactacaatttttatcttatatattcaactttttcctgtagTGGGTCTAAGATCTTCCCTGCATTTATTGGTTTCCTTAAAAGCAAAGACCCCAGTGATGGGACAGAGCAGACATTACTGAACGAGCTAGCTTCTTTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - -cccattt
- - - - - - - - - - - -aattaaa
- - - - - - - - - - - - - - - - ccaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtac