Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtaaattacatttgcacatatctgattccctttatcatatggtaggcaatataaactgattgagggtttgttccatgtagGCCTGGTGATACCATTCTTATTGCAGCAGGTGGGAGTCATCTGGCCTCTAATATTCAGATAAAAAAGCCCCTTTGCCTG

Basic information

species Vitis vinifera
transcript Vv13s0139g00260.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0139g00260.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G54480.1 (Arabidopsis thaliana), 3'ss of exon 2
gttagtaa-atta-catttgcacatatctgattccctttatcat--atggtaggcaatataaactgattgagggtttgttccatgtagGCCTGGTGATACCATTCTTATTGCAGCAGGTGGGAGTCATCTGGCCTCTAATATTCAGATAAAAAAGCCCCTTTGCCTG
||| |||| |||| || || |   ||| |      |||| | ||   |   |||    |||||   |   |    ||||  | | ||| || || ||||||||| | || | ||| |||||||   |||  |  |||||||||||||| |||||||| |||||||||
gtttgtaatattatcagttacgt-tatttacacttctttgttattcgtaaaagggtccataaatctaaccaaa--ttgtcacctctagACCCGGCGATACCATTTTAATAGTAGCCGGTGGGAACTATCGCGTTTCTAATATTCAGATTAAAAAGCCTCTTTGCCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110692482|gb|EE071776.1|EE071776
EST:     TCTGAGCCTGGAGTTTTCCCAAGCATTGAAATGGCTGTTTCTGCTGCTAG                         GCCTGGTGATACCATTCTTATTGCAGCAGGTGGGAGTCATCTGGCCTCTAA
genomic: TCTGAGCCTGGAGTTTTCCCAAGCATTGAAATGGCTGTTTCTGCTGCTAGgttagtaaat ... ttccatgtagGCCTGGTGATACCATTCTTATTGCAGCAGGTGGGAGTCATCTGGCCTCTAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccctttatcatatggtaggcaatataaactgattgagggtttgttccatgtagGCCTGGTGATACCATTCTTATTGCAGCAGGTGGGAGTCATCTGGCCTCTAATATTCAGATAAAAAAGCCCCTTTGCCTG
                            aactgat  putative branch site (score: 3)
                                         tttgttcc  putative PPT
                      aatataaactgatt  TA-rich tract