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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgacctatgtctgcctacttctaattctcttatattatttgtttgttagcatgcatgatcatattggaacttgctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG

Basic information

species Vitis vinifera
transcript Vv13s0106g00570.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0106g00570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G30830.1 (Glycine max), 3'ss of exon 12
-------------gtactgacctatgtctgcctacttctaattctcttatattatttgtttgttagcatgcatgatcatattggaacttgctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG
              |  | || ||  |    ||| ||  |||| | ||  |||     |    |   ||  |  || | | |   |  | |||  || | |   |||||||||||||||||||||||||||| ||||||||  ||||  ||||||||| ||||||||| || ||||| |||
gtgagtttgttgtctcattacttaaattcatctaatttcaattttttttaattgcaattgctatgctatagaacattaaactaatatct-ctca-ctatcatgtagCCTGCCCATGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAG

upper sequence: Vv13s0106g00570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G14040.1 (Glycine max), 3'ss of exon 12
-------------gtactgacctatgtctgcctacttctaattctctta--tattatttgtttgttagcatgcat---gatcatattggaacttgctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG
              |  | || ||  |    |||  |  | || |||||  |   |||  | || ||     |||    || | | |   |  |   |  |  | |   |||||||||| ||||||||||||||||| ||||||||  ||||  ||||||||| ||||||||| || ||||| |||
gtgagtttgtggtctcattacttaaattcatctaacttcatttttcttaattgcaattgctatgctatagaacattaaaattaaactaatatctctcc--ccatcatgtagCCTGCCCACGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAG

upper sequence: Vv13s0106g00570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G01710.1 (Glycine max), 3'ss of exon 12
-------------------------------------------------------------------gtactgacctatgtctgcctacttct----aattctcttatattatttgtttgttagcatgcatgatcatattggaacttgc--tcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG
                                                                   | ||   || |||       |    |    |||     |  | | | |   |  ||  | || | |  | | ||   |||    ||  |  |||   |||||||||||||||| ||||||||||| ||||||||  |||| ||||| |||  | ||||||| || ||||| |||
gtgagtccattctcactcctttgtcaagtaaaatccaatttggcttgaccagttgaccttaggataagcacatgccaatgaaaagaaaaaagtggaaaataaaaatgcaatctatacatactatgaagctttaa-acaatgatcctttttttcccccctgatttagCCTGCCCATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAG

upper sequence: Vv13s0106g00570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G30850.1 (Glycine max), 3'ss of exon 10
gtactgacctatgtctgcctacttctaattctcttatattatttgtttgttagcatgcatgatcatattggaacttgctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG
       |||||   | |||  |  || |||   |||   | |  | || ||  ||| |  || | | ||  ||||      || ||  | |||||||||||||||| ||||||||||| ||| ||||  |||| || || |||  | ||||||| || ||||| |||
--gtaagcctat---tacctggtattacttcc--tatggaactgatatgcta-tatggaatattaaactgatactt-----cctatgttatagCCTGCCCATGAGAAGATTGGAGTTGTTGATGCTCAGTGGATTGTGCACCAAGGTATTCCCTCACTAGGGAATCAG

upper sequence: Vv13s0106g00570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G37770.1 (Glycine max), 3'ss of exon 12
--------------------------------------------------gtactgacctatgtc--tgcctacttctaattctcttatattatttgtttgttagcatgcatgatcatattggaacttgctcgtcttt--gaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG
                                                    |    |  ||| |  ||   |     | |        |  ||    |   || ||| |    | |  ||  |   | ||| | |||  || | ||||||| |||||||| ||||||||||| ||||||||  |||| ||||| |||  | ||||||| || ||||| |||
gtgagtccattctcacattttctcaaatcgtctaatttggtgtgaccttaagataagcacatgccaatgaaaaaaaaaagtgaaaaataaaaatgcaatctgtaacattctgtgtaactttaaactattctcctttttctgatatagCCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAG

upper sequence: Vv13s0106g00570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G14050.1 (Glycine max), 3'ss of exon 10
gtactgacctatgtctgcctacttctaattctcttatattatttgtttgttagcatgcatgatcatattggaacttgctcgtctttgaa-acagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG
     | ||||| |   |  | | ||     || |||   | |  | || ||  ||| |  || | ||    |  | || |   |   | | |||||||||||||||| ||||||||||| ||| ||||  |||| || || |||  | ||||||| || ||||| |||
--gtaggcctatattacctgattact-----tcctatgaaactgatatgcta-tatgtaatattaaatccata--tacttgctatgatatatagCCTGCCCATGAGAAGATTGGAGTTGTTGATACTCAGTGGATTGTGCACCAAGGTATTCCCTCACTAGGGAATCAG

upper sequence: Vv13s0106g00570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G26440.4 (Arabidopsis thaliana), 3'ss of exon 11
gtactgacctatgtctgcctacttctaattctcttatattatttgtttgttagcatgcatgatcatattggaac-----ttgctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG
    | || ||    | |    |  | |    |   ||| ||||        |  | |   |  |    | |||     ||  |  |     ||||||||||| |||||||| ||||| ||||| ||||||||| ||||| |||||||||   |||| ||  | || | ||||
--gttaacatacaaatacaacttattcacaaacgcgtataattttacaaaacgttttcgaaactaagaagaaacactttttaatgattcaataaacagCCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAG

upper sequence: Vv13s0106g00570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G67850.2 (Arabidopsis thaliana), 3'ss of exon 12
----------------gtactgacctatgtctgcctacttctaattctcttatattatttgtttgttagcatgcatgatcatattggaacttgctcgtctttgaaa--cagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG
                 |   |  |  ||| || | ||    ||  |     |  || || | |  |    |  ||||  | ||  |||  |  |   |   ||||  |||||||| |||||||| || ||||| || ||||||||| || ||||||||||| || |||| || ||||| ||||| 
gtaagaaaagagacacttgaagttcgttgtttgtc-acgcaaaagacagagtttctaattatatcgtctgttatatgacga-atctgaatatattttacaccgaaatgcagCCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAA

upper sequence: Vv13s0106g00570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G13000.2 (Arabidopsis thaliana), 3'ss of exon 11
-gtactgacctatgtctgcctacttctaattctct-tatattatttgtttgttagcatgcatgatcatattggaacttgctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG
  || | |  | || || | ||| |  | |  |   || | |     | |||| |      |    |      |  || ||  |     ||||||||||| |||||||| || |||||||| ||||||||| ||||| | |||||| || |||| ||  | || | ||||
gttaatcattt-tgcctacataccttgactcttaaatacactggacatgtgtttggtaagttatctactaaaaagtttcctaataaaacaaacagCCTGCACATGAGAAGATAGGAGTTGTGGATTCTCAATGGATCATACATCAATCTCTTCCTTCTTTAGGCAGCCAG

upper sequence: Vv13s0106g00570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S70_58V6.1 (Physcomitrella patens), 3'ss of exon 12
-----------------------------------------------------------------------------------------------------gtactgaccta--tgtctgcctacttctaattctcttatattatttgtttgttagcatgcatgatcatattggaacttgctcgtctttgaaa----cagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG-------------------------
                                                                                                      ||||     |  | ||   ||  || | ||| ||| |   | | | |   ||       ||  |||| |    | | | | |||||    |    |||||||| ||||| |||||||||||||||||| ||||  |||||   ||||    ||| |  || ||    | |  |                         
gtaagtttatacgaagttgaatttcgtcagtcgtaggtgcagagcttacataactttctaattgcatcaacaaatggacacaagcttcggtggacttctttctactagttgaagtatcactctggttgttattttctcagtctctgtctgaattgttggatatc-tcatctactgaatggtttgtcttgatgatttgcagCCTGCACATGATAAAATTGGAGTTGTAGATGCTCAGTGGATCCGACATCGGGTTGTGCTATCTCTAAATAGCTCGGTTTGTGTTCCTCACAACCATTCAC

upper sequence: Vv13s0106g00570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S70_58V6.2 (Physcomitrella patens), 3'ss of exon 12
-----------------------------------------------------------------------------------------------------gtactgaccta--tgtctgcctacttctaattctcttatattatttgtttgttagcatgcatgatcatattggaacttgctcgtctttgaaa----cagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG
                                                                                                      ||||     |  | ||   ||  || | ||| ||| |   | | | |   ||       ||  |||| |    | | | | |||||    |    |||||||| ||||| |||||||||||||||||| ||||  |||||   ||||    ||| |  || ||    | |  |
gtaagtttatacgaagttgaatttcgtcagtcgtaggtgcagagcttacataactttctaattgcatcaacaaatggacacaagcttcggtggacttctttctactagttgaagtatcactctggttgttattttctcagtctctgtctgaattgttggatatc-tcatctactgaatggtttgtcttgatgatttgcagCCTGCACATGATAAAATTGGAGTTGTAGATGCTCAGTGGATCCGACATCGGGTTGTGCTATCTCTAAATAGCTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttgtttgttagcatgcatgatcatattggaacttgctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG
                                       ctcgtcttt  CT-rich tract
                       atcatatt  TA-rich tract