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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactggtatttttcagctgttcaatcacgagacatgacatataaaccagacactgattttctttgatcgagcacataattatttatccacatgcatattaacccaaaaatcattgatatacatttaacagGAGATAGACGCTTCTCTCCATGGAAAGGATCAGTGGTTGACTCCGTCATAGGAGTATTTCTTACCCAGAATGTTTCAGACCACCTTTCTAG

Basic information

species Vitis vinifera
transcript Vv13s0074g00450.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0074g00450.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G32960.1 (Glycine max), 3'ss of exon 8
gtactggtatttttcagctgttcaatcacgagacatgacatataaaccagacactgattttctttgatcgagcacataattatttatccacatgcatattaacccaaaaatcattgata--tacatttaacagGAGATAGACGCTTCTCTCCATGGAAAGGATCAGTGGTTGACTCCGTCATAGGAGTATTTCTTACCCAGAATGTTTCAGACCACCTTTCTAG
                           |       | | | | ||| |||| ||  |||  ||| ||| |   |  |  | | || ||  |||  ||||| ||   ||||||| | |||  |  | ||  |||||||||||||||| ||    ||||||||||| || |||||||| || ||||| || || || || ||||||||||||||||| ||||| ||
---------------------------atatttattaatagaaaaaacagaaacatattcactt-gattgctaaatttttcacttgtcagcat--atatttac---aaaatcaattatacctctactttgcagGAGATAGACGCTTTTCAAAGTGGAAAGGATCTGTTGTTGACTCGGTGATAGGTGTTTTCCTCACTCAGAATGTTTCAGACCATCTTTCAAG

upper sequence: Vv13s0074g00450.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G34600.1 (Glycine max), 3'ss of exon 5
gtactggtatttttcagctgttcaatcacgagacatgacatataaaccagacactgatt---ttctttgatcgagcac-ataattatttatccacatgcatattaacccaaaaatcattgata--tacatttaacagGAGATAGACGCTTCTCTCCATGGAAAGGATCAGTGGTTGACTCCGTCATAGGAGTATTTCTTACCCAGAATGTTTCAGACCACCTTTCTAG
                                     | | | ||||||   | | |||   || ||   | ||   | | || | || | |      ||||| |     ||||||| | |||  |  | ||  |||||||||||||||| ||    ||||||||||| || |||||||| || ||||| || || || || |||||||||||||| || ||||| ||
------------------------------------aaaacagaaaccaatgatttattaaattattcacttgattgctaaaacttttcacctgtcaacatat-atttataaaatcaattatacctctactttgcagGAGATAGACGCTTTTCAAAGTGGAAAGGATCTGTTGTTGACTCAGTGATAGGTGTTTTCCTCACTCAGAATGTTTCAGATCATCTTTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattatttatccacatgcatattaacccaaaaatcattgatatacatttaacagGAGATAGACGCTTCTCTCCATGGAAAGGATCAGTGGTTGACTCCGTCATAGGAGTATTTCTTACCCAGAATGTTTCAGACCACCTTTCTAG
                             aaaaatcattgatata  TA-rich tract