Sequence
atgc intronic sequence ATGC exonic sequencegtaggtattcttggttaaaatctggtcagaagtttaatattctccattctttctgtctccaattttcctcttgcaccatgctctctcccatgcttgttttcctttatcatatttggttatttttttacaatttgctttatcatttgacatgggtcccttctgtggattttgaagATATGGCACTTGAATCATGTGAAGGTGGAGAACTGTTTGATCAAATAACCAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G34430.1 (Glycine max), 3'ss of exon 2
gtaggtattcttggttaaaatctggtcagaagtttaat-attctccattctttctgtctccaattttcctcttgcaccatgctctctcccatgcttgttttcctttatcatatttggttatttttttacaatttgctttatcatttgacatgggtcccttctgtggattttgaagATATGGCACTTGAATCATGTGAAGGTGGAGAACTGTTTGATCAAATAACCAGG
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gtaagtattcgtaggtgtattttacctttacacttgcttatgctctgacttactcctctctgataccttttcaactcta-gcttttgctcac-cttgtttgcc------aagttggtttatatttatt---ttgacgttattttttcccctttttcttttacatcggt---gaagACATGGCACTTGAATCCTGTGAAGGTGGAGAACTTTTTGATCAAATAACCAGG
upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G33140.1 (Glycine max), 3'ss of exon 2
gtaggtattcttggttaaaatctggtcagaagtttaatattctccattctttctgtctccaattttcctcttgcaccatgctctctcccatgcttgttttcctttatcatatttggttatttttttacaatttgctttatcatttgacatgggtcccttctgtggattttgaagATATGGCACTTGAATCATGTGAAGGTGGAGAACTGTTTGATCAAATAACCAGG
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gtaagtattcctggatgtatgttatctttacacttgcttatggtctgacttactcctctctgataccttctca------actcttccttttgctc-ccctcgtttgccaagttggtttatatttatt---ttgacattatttttttcccttt-ttccttttacat-cggtgaagACATGGCTCTTGAATCCTGTGAAGGTGGAGAACTTTTTGATCAAATAACCAGG
upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G04510.2 (Arabidopsis thaliana), 3'ss of exon 2
gtaggtattcttggttaaaatctggtcagaagtttaatattctccattctttctgtctccaattttcctcttgcaccatgctctctcccatgcttgttttcctttatcatatttggttatttttttacaatttgctttatcatttgacatgggtcccttctgtggattttgaagATATGGCACTTGAATCATGTGAAGGTGGAGAACTGTTTGATCAAATAACCAGG
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-----------------------------------------------------------------------------gtaggtatttctaattctaatgaacattcctgtgcttgaacattctgtagttgattgatttttcttatttc-----tgctcggtatgcttttggtagATATGGCACTTGAATCTTGTGAGGGTGGCGAGCTTTTCGACCAAATAACCAGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717324|gb|FC068850.1|FC068850EST: CCCTGGCATTGTGCGATTATTTTTTACATTTCAAGATACCTTTTCTCTGT ATATGGCACTTGAATCATGTGAAGGTGGAGAACTGTTTGATCAAATAACCA
genomic: CCCTGGCATTGTGCGATTATTTTTTACATTTCAAGATACCTTTTCTCTGTgtaggtattc ... gattttgaagATATGGCACTTGAATCATGTGAAGGTGGAGAACTGTTTGATCAAATAACCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttttacaatttgctttatcatttgacatgggtcccttctgtggattttgaagATATGGCACTTGAATCATGTGAAGGTGGAGAACTGTTTGATCAAATAACCAGG
atttgac putative branch site (score: 4)
tttatcattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaggtattcttggttaaaatctggtcagaagtttaatattctccattctttctgtctccaattttcctcttgcaccatgctctctcccatgcttgttttcctttatcatatttggttatttttttacaatttgctttatcatttgacatgggtcccttctgtggattttgaagATATGGCACTTGAATCATGTGAAGGTGGAGAACTGTTTGATCAAATAACCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA