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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtttggtgtttatcctattatcattattatcattagaattaatggttttccttcaagtttgccctttggggttggctttcagtttcatctaacaacatgtgtagGCAGTCATGGCCTTTTGCAACAGGGGAATCCTGAATATGATGTCAAGAGGCGGGAACTATATGACTATTATCATCCATTAGAAATCTCCCCAAGTATTCC

Basic information

species Vitis vinifera
transcript Vv13s0073g00650.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0073g00650.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G33690.1 (Glycine max), 3'ss of exon 3
gtaagt-gtttggtgtttatcctattatcattattatcattagaattaatggttttccttcaagtttgccctttggggt-tggctttcagtttcatctaacaacatgtgtagGCAGTCATGGCCTTTTGCAACAGGGGAATCCTGAATATGATGTCAAGAGGCGGGAACTATATGACTATTATCATCCATTAGAAATCTCCCCAAGTATTCC
||| || |||   |     |  ||||       ||    ||   ||  | |     |  || ||       | ||     |  ||   || ||||| |    || | ||||| ||||||||| |||||||| ||||| ||||| |||||||||| ||| |||| | |  ||||||| ||||| |||||||||||  | || || | ||||  
gtatgttgttccctcaaccttttatttctccctttgaggttttgatgcaagaaaaactgtctaggaattgatatgtatcatatctcatagattcatttgt--acttttgtagCCAGTCATGGTCTTTTGCAGCAGGGTAATCCAGAATATGATGCCAAAAGGCAGCAGTTATATGAATATTACCATCCATTAGAGTTTTCGCCGACTATTGG

upper sequence: Vv13s0073g00650.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G12660.1 (Glycine max), 3'ss of exon 3
gtaagtgtttggtgtttatcctattatcattattatcattagaattaatggttttccttcaagtttgccctttggggttggctttcagtttcatctaacaacatgtgtagGCAGTCATGGCCTTTTGCAACAGGGGAATCCTGAATATGATGTCAAGAGGCGGGAACTATATGACTATTATCATCCATTAGAAATCTCCCCAAGTATTCC
 | |  ||||  | ||  |||  ||    || | ||    ||||  |||   | || ||     |||   | |    |   ||   || ||||| |    || | ||||| ||||||||| ||||| || ||||| ||||| |||||| ||| |||||||| | |  ||||||| ||||| |||||||||||  | || || | ||||  
ctcaacgttt--tattcctccctttgaggttttgat-gcaagaa--aat--ctgtcattaggaattgatatgtatcat-atctcatagattcatttgt--acttttgtagCCAGTCATGGTCTTTTACAGCAGGGTAATCCAGAATATAATGCCAAGAGGCAGCAGTTATATGAATATTACCATCCATTAGAGTTTTCACCGACTATTGG

upper sequence: Vv13s0073g00650.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G33910.1 (Glycine max), 3'ss of exon 4
------------gtaagtgtttggtgtttatcctattatcattattatcattagaattaatgg-----ttttccttcaagtttgccctttggggttggctttcagtttcatctaacaacatgtgtagGCAGTCATGGCCTTTTGCAACAGGGGAATCCTGAATATGATGTCAAGAGGCGGGAACTATATGACTATTATCATCCATTAGAAATCTCCCCAAGTATTCC
             | |  ||||  | ||| |||  ||     | | ||      ||  |||||      | || ||     |||   | |    |   ||   ||  |||| ||   || | ||||| ||||||||| |||||||| ||||| ||||| || ||| ||| ||| |||| | |  ||||||| ||||| |||||||||||  | || |||| ||||  
gtatgttgttctctcaacgttt--tatttctccctttgaggctttgatgcaagaaaaaaatggaaaaactgtcattaggaattgatatgtatcat-atctcatagaatcatttat--acttttgtagCCAGTCATGGTCTTTTGCAGCAGGGTAATCCAGATTATAATGCCAAAAGGCAGCAGTTATATGAATATTACCATCCATTAGAGTTTTCGCCAAATATTGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71863782|gb|DT012837.1|DT012837
EST:     TTTTGATGCCACACTAACAAAGTACTGGGTCAATGGCTGTCGAGGGCAAA                         GCAGTCATGGCCTTTTGCAACAGGGGAATCCTGAATATGATGTCAAGAGGC
genomic: TTTTGATGCCACACTAACAAAGTACTGGGTCAATGGCTGTCGAGGGCAAAgtaagtgttt ... acatgtgtagGCAGTCATGGCCTTTTGCAACAGGGGAATCCTGAATATGATGTCAAGAGGC
EST: gi|71862430|gb|DT011485.1|DT011485
EST:     TTTTGATGCCACACTAACAAAGTACTGGGTCAATGGCTGTCGAGGGCAAA                         GCAGTCATGGCCTTTTGCAACAGGGGAATCCTGAATATGATGTCAAGAGGC
genomic: TTTTGATGCCACACTAACAAAGTACTGGGTCAATGGCTGTCGAGGGCAAAgtaagtgttt ... acatgtgtagGCAGTCATGGCCTTTTGCAACAGGGGAATCCTGAATATGATGTCAAGAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttcaagtttgccctttggggttggctttcagtttcatctaacaacatgtgtagGCAGTCATGGCCTTTTGCAACAGGGGAATCCTGAATATGATGTCAAGAGGCGGGAACTATATGACTATTATCATCCATTAGAAATCTCCCCAAGTATTCC
                                     atctaac  putative branch site (score: 2)