1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcttcacatgggatgttggtttgtgcaatgatgcaattggtctagccacacaagctgcaattattaacttattttgttctatttttgttgtggatatcagCAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCGACCCTCCTCAGGATCTCCAGGAAACCAGGCTGACTCTAGCATTAAGGCT
species | Vitis vinifera |
transcript | Vv13s0073g00170.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAG CAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCGEST: gi|352778158|gb|FQ468820.1|FQ468820
genomic: GCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAGgtttctgtca ... tggatatcagCAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCG
EST: GCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAG CAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCGEST: gi|110713084|gb|EE088694.1|EE088694
genomic: GCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAGgtttctgtca ... tggatatcagCAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCG
EST: GCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAG CAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCGEST: gi|110724162|gb|EE099748.1|EE099748
genomic: GCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAGgtttctgtca ... tggatatcagCAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCG
EST: GCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAG CAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCGEST: gi|352773871|gb|FQ473003.1|FQ473003
genomic: GCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAGgtttctgtca ... tggatatcagCAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCG
EST: GCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAG CAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCGEST: gi|30297888|gb|CB974682.1|CB974682
genomic: GCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAGgtttctgtca ... tggatatcagCAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCG
EST: GCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAG CAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCGEST: gi|352769773|gb|FQ468701.1|FQ468701
genomic: GCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAGgtttctgtca ... tggatatcagCAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCG
EST: GCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAG CAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCGEST: gi|37183965|gb|CF603319.1|CF603319
genomic: GCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAGgtttctgtca ... tggatatcagCAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCG
EST: GCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAG CAAACCTGTGGAGCCTGACCGTCTCTTTGEST: gi|352781498|gb|FQ468342.1|FQ468342
genomic: GCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAGgtttctgtca ... tggatatcagCAAACCTGTGGAGCCTGACCGTCTCTTTG
EST: GCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAG CAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCGEST: gi|30297709|gb|CB974503.1|CB974503
genomic: GCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAGgtttctgtca ... tggatatcagCAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCG
EST: GCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAG CAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCG
genomic: GCAATTTCTAAGCTAGAAGAGGAGTTTAAGCAACTCTTATCATCTTACAGgtttctgtca ... tggatatcagCAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCG
ccacacaagctgcaattattaacttattttgttctatttttgttgtggatatcagCAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCGACCCTCCTCAGGATCTCCAGGAAACCAGGCTGACTCTAGCATTAAGGCT
tattaac putative branch site (score: 1)
aattattaacttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttcacatgggatgttggtttgtgcaatgatgcaattggtctagccacacaagctgcaattattaacttattttgttctatttttgttgtggatatcagCAAACCTGTGGAGCCTGACCGTCTCTTTGATGGTCTCCCCAACTCACTGCGACCCTCCTCAGGATCTCCAGGAAACCAGGCTGACTCTAGCATTAAGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- -tcacatg
- - - - - - atgttgg
- - - - - - - - - -tttgtgc
- - - - - - - - - - - - - - -gatgcaa
- - - - - - - - - - - - - - - - - - - - - - -ccacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcaat