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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcttcattctcctgatgaaaactcagaaccatttttgaagctaaaactaaaaatcaaatgaattctgcagGAATCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATATCCCCTCAAGGATTAACAG

Basic information

species Vitis vinifera
transcript Vv13s0067g03510.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03510.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os01g72330.1 (Oryza sativa), 3'ss of exon 3
------------------------gtatcttcattctcctgatg-----aaaactcagaaccattt----ttgaagctaaaactaaa---------------aatcaaatgaattctgcagGAATCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATATCCCCTCAAGGATTAACAG
                        | ||  | || |||           ||| ||  |  || |||     || |  |  |   |||                 |||  |      | |||| ||| || ||  |||| ||||||||||||||||||||||| ||||||||| | ||  ||||||| |||||
gtaagtttttgtttgcagagaattgaattcttatcctctgagcattcataaatcttgggtccttttgttgctggaagtggagtaaaatttgttccttttgctgttcattttgggggtacagGGATCATCTTCATTGAAGGACATACCAGTTGTGATCATGTCTTCTGAGAATGTGCCTGCAAGGATCAACAG

upper sequence: Vv13s0067g03510.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G21650.1 (Glycine max), 3'ss of exon 3
--------------------------gtatcttcattctcctg-atgaaaactcagaaccattttt--gaagctaaaactaaaaatcaaatgaattctgcagGAATCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATATCCCCTCAAGGATTAACAG
                            | ||||| |  | || ||     | | |      ||||   ||  ||| |  |  ||   | |||  | |||||||||||  |||||| |||||||||||||| ||||| |||||||| |||||| ||||  |||||||||||||
ctcaaaccatttttgtgatgtcataacaaccttcaattacttgtatatcttccctggtttgattttagaaaaataataacatgaagttattga--tttgcagGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATTAACAG

upper sequence: Vv13s0067g03510.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G26770.1 (Glycine max), 3'ss of exon 3
------------------gtatcttcattctcctgatgaaaactcagaaccatttt------tgaagctaaaactaaaaatcaaatgaatt---ctgcagGAATCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATATCCCCTCAAGGATTAACAG
                    ||| | ||    ||     || ||    |   || |      ||| | | |||   || || || |   ||    |||||||||||  |||||| ||| |||||||||||||||| |||||||| |||||| | || |||||||| |||||
aatcaaatttgctcatggccatcatgatatatctttgacaacctgtatattcttctgcttgatgatgttgaaaaataatattaagttctttgatttgcagGAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAG

upper sequence: Vv13s0067g03510.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G37770.1 (Glycine max), 3'ss of exon 3
----------------------------gtatcttcattctcctgatgaaaactcagaaccatttttgaagctaaaactaaaaatcaaatgaatt---ctgcagGAATCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATATCCCCTCAAGGATTAACAG
                             ||||||      ||||   |    || |     ||  ||| | |||||   || || || |   ||    |||||||||||  |||||| ||| |||||||||||||||| |||||||| |||||| | || |||||||| |||||
aatcaaatttgatcatggccatcatggtatatctttgacagcctgtatattcttctgc----ttgatgatgttaaaaaataatattaagttccttgatttgcagGAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAG

upper sequence: Vv13s0067g03510.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G29250.1 (Glycine max), 3'ss of exon 3
-----------------------gtatctt-cattctcctgatgaaaactcagaaccatttttgaagctaaaactaaaaatcaaatgaatt---ctgcagGAATCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATATCCCCTCAAGGATTAACAG
                       ||   ||  |  || |   ||           ||   ||||| |||| ||  | ||   |||   |||    || ||||||||  |||||| |||||||||||||| ||||| |||||||| |||||| ||||  ||||||| |||||
aactctcaaaccatttttgtgatgtgcattgtaaccttcaattgcttgtatcttccctggtttgatgctagaaaaataacagaaagttattgacttgtagGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATCAACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaaactcagaaccatttttgaagctaaaactaaaaatcaaatgaattctgcagGAATCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATATCCCCTCAAGGATTAACAG
                             aactaaa  putative branch site (score: 2)
                          taaaactaaaaatcaa  TA-rich tract