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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcttcatttgcctaattattgaatttcaacatcttattattttactccaagttagtcagaacagttcattaaaattaaattttaaataaacatgaatctgcagGAGTCTACATCTCTTAAAGGCATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAG

Basic information

species Vitis vinifera
transcript Vv13s0067g03460.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G21650.1 (Glycine max), 3'ss of exon 3
gtatcttcatttgcctaattattgaatttcaacatcttattattttactccaagttagtcagaacagttcattaaaattaaattttaaataaacatgaatctgcagGAGTCTACATCTCTTAAAGGCATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAG
    ||  |      |  || |    |   |||| | |   |||        |  |   | |    | |  |  |||   |||   |   |   ||  || ||||||| |||| ||||||||||| ||| ||||| ||||| |||||||| |||||| ||||  | |||||||||||
----ctcaaaccattt--ttgtgatgtcataacaaccttcaattacttgtatatcttccctggtttgattttagaaaaataataacatgaagttattgatttgcagGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATTAACAG

upper sequence: Vv13s0067g03460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G26770.1 (Glycine max), 3'ss of exon 3
gtatcttcatttgcctaattattgaatttcaacatcttattattttactccaagttagtcagaacagtt-cattaaaattaaattttaaataaacatgaatctgcagGAGTCTACATCTCTTAAAGGCATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAG
  |     ||||||  | |      ||    | || |  ||      ||  |  ||  || |     |    || |||   ||| |||| |   | |  || ||||||| |||| ||||||||||  ||| ||||||||||| |||||||| |||||| | || || ||||| |||||
--aatcaaatttgctca-tggcc--atcatgatatatctttgacaacctgtatattcttctgcttgatgatgttgaaaaataatattaagtt--ctttgatttgcagGAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAG

upper sequence: Vv13s0067g03460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G37770.1 (Glycine max), 3'ss of exon 3
------gtatcttcatttgcctaattattgaatttcaacatcttattattttactccaagttagtcagaacagttcattaaaattaaattttaaataaacatgaatctgcagGAGTCTACATCTCTTAAAGGCATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAG
       | |  ||||   | | ||  |  |  ||  ||| | | | || || || |   ||  | |          ||||||   ||| |||| |   | |  || ||||||| |||| ||||||||||  ||| ||||||||||| |||||||| |||||| | || || ||||| |||||
aatcaaatttgatcatggccatcatggtatatctttgacagcctgt-atatt-cttctgcttgatga--------tgttaaaaaataatattaagtt--ccttgatttgcagGAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAG

upper sequence: Vv13s0067g03460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G29250.1 (Glycine max), 3'ss of exon 3
----gtatcttcatttgcctaattattgaatttcaacatcttattattttactccaagttagtcagaacagttcattaaaattaaattttaaataaacatgaatctgcagGAGTCTACATCTCTTAAAGGCATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAG
     |     |||||   | ||   || |||  ||| |   |||  ||   ||     | ||  ||         || ||  ||||   | | |   ||  |  || |||| |||| ||||||||||| ||| ||||| ||||| |||||||| |||||| ||||  | ||||| |||||
aactctcaaaccatttttgtgatg--tgcattgtaaccttcaattgcttgtatcttccctggtttga------tgctagaa--aaataacagaaagttattgacttgtagGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATCAACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttagtcagaacagttcattaaaattaaattttaaataaacatgaatctgcagGAGTCTACATCTCTTAAAGGCATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTAACAG
           aacagttcattaaaat  TA-rich tract