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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatctctcattttgatcttagctttcaaatttctttgatcttgcagctttctcatggacaacatccagatcagtgtgaaaacttcatattttccactgattgggacttgggaaagttaccaattttgaagccaaactgaagtctaaattcatgtgaatctgcagGAGTCTACATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAG

Basic information

species Vitis vinifera
transcript Vv13s0067g03430.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03430.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os01g72330.1 (Oryza sativa), 3'ss of exon 3
gtaagatctctcattttgatcttagctttcaaatttctttgatcttgcagctttctcatggacaacatccagatcagtgtgaaaacttcatattttccactgattgggacttgggaaagttaccaattttgaagccaaactgaagtctaaattcatgtgaatctgcagGAGTCTACATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAG
                              || ||| | |    ||||||     | |      |    | || || |   ||| |||      ||    || | |       | ||| ||      |||          ||  ||  |  ||     |    | ||||  ||  | ||  |||| ||||||||||||||||||||||| ||||||||  | ||| ||||||| |||||
----------------------------gtaagtttttgt----ttgcagagaattgaattcttatcctctgagcattcataaatcttgggtccttttgttgctggaagtggagtaaaatttgttccttt----------tgctgttcatttt-----gggggtacagGGATCATCTTCATTGAAGGACATACCAGTTGTGATCATGTCTTCTGAGAATGTGCCTGCAAGGATCAACAG

upper sequence: Vv13s0067g03430.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os12g04500.1 (Oryza sativa), 3'ss of exon 3
gtaagatctctcattttgatcttagctttcaaatttctttgatcttgcagctttctcatggacaacatccagatcagtgtgaaaacttcatattttccactgattgggacttgggaaagttaccaattttgaagccaaactgaagtctaaattcatgtgaatctgcagGAGTCTACATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAG
                                              | |  |  |   |   |   ||   |||       |  | || || |  || ||| |    |||   |  | || |    |  ||||  ||   |     ||   ||  | ||      ||||| ||  | | | | |  ||||| ||||||||||||||||| || || ||||| ||||||||||| || ||
----------------------------------------------gtaattaccatctctgctctattt-gattgtaccaaccatttgatttgatctactcaagatgac--agtgaggtcagt--tcctgaatacagttttttccctt--ttggtttgttcaatcagGAATCGTCTTATTTAAGGGACATCCCAGTTGTGATCATGTCATCGGATAACATTCCTTCAAGGATCAATAG

upper sequence: Vv13s0067g03430.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G129954_T01 (Zea mays), 3'ss of exon 3
gtaagatctctcattttgatcttagctttcaaatttctttgatcttgcagctttctcatggacaacatccagatcagtgtgaaaacttcatattttccactgattgggac--ttgggaaagttaccaattttgaagccaaactgaagtctaaattcatgtgaatctgcagGAGTCTACATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAG
                                              |   ||  || |   ||  |  |  ||||| ||   |  ||  ||| |     ||   ||| |   |     ||| || |||     ||   | |   | || |   ||  | ||      ||||||||  | ||||| | ||| || || || ||||||||||||||||||||||| ||||||||||| || ||
----------------------------------------------gtgacta-ctgaactactccggcatgatcactgaacattctgtatagtgcttgctttctggcatgatcactgaagataacaaggcctaa---agatgcatgtttggtttggtttgctctaccagGAGTCGTCGTCTCTCAGAGATATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAG

upper sequence: Vv13s0067g03430.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G21650.1 (Glycine max), 3'ss of exon 3
gtaagatctctcattttgatcttagctttcaaatttctttgatcttgcagctttctcatggacaacatccagatcagtgtgaaaacttcatattttccactgattgggacttgggaaagttaccaattttgaagccaaactgaagtctaaattca--tgtgaatctgcagGAGTCTACATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAG
                                                                     || | || | |    |  |||||    ||    |||   |||||   |  || ||   |||||    | |   |     | ||  |  | |  || ||||||| |||| |||||| |||||||||||||| ||||| |||||||| |||||  ||||  |||||||||||||
-------------------------------------------------------------------ctcaaaccatttttgtgatgtcataacaaccttcaatt---acttgtatatcttccctggtttgattttagaaaaataataacatgaagttattgatttgcagGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATTAACAG

upper sequence: Vv13s0067g03430.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G26770.1 (Glycine max), 3'ss of exon 3
gtaagatctctcattttgatcttagctttcaaatttctttgatcttgcagctttctcatggacaacatccagatcagtgtgaaaacttcatattttccactgattgggacttgggaaagttaccaattttgaagccaaactgaagtctaaattcatgtgaatctgcagGAGTCTACATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAG
                                             |  |  || ||||||| || |||  | ||   | ||| ||| |  ||| |||  ||| |||                   || |||||   |||   ||   ||| ||| |    || ||||||| |||| |||||| ||| |||||||||||||||| |||||||| |||||  | || |||||||| |||||
-------------------------------------------aatcaaatttgctcatggccatcatg-atatatctttgacaacct-gtatattcttctgcttga----------------tgatgttgaa---aaat--aatattaagttcttt--gatttgcagGAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAG

upper sequence: Vv13s0067g03430.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G37770.1 (Glycine max), 3'ss of exon 3
gtaagatctctcattttgatcttagctttcaaatttctttgatcttgcagctttctcatggacaacatccagatcagtgtgaaaacttcatattttccactgattgggacttgggaaagttaccaattttgaagccaaactgaagtctaaattcatgtgaatctgcagGAGTCTACATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAG
                                                             |  | ||   |||||  |  |  |    |||| ||  || |  ||    ||       ||    || || ||    || | |  |  |  | | ||   || ||||||| |||| |||||| ||| |||||||||||||||| |||||||| |||||  | || |||||||| |||||
------------------------------------------------------------aatcaaattt-gatcatggccatcatggtatatctttgacagcctgtatattcttctgcttgatgatgttaaa----aaataatattaagttccttg---atttgcagGAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAG

upper sequence: Vv13s0067g03430.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G29250.1 (Glycine max), 3'ss of exon 3
gtaagatctctcattttgatcttagctttcaaatttctttgatcttgcagctttctcatggacaacatccagatcagtgt-gaaaacttcatattttccactgattgggacttgggaaagttaccaattttgaagccaaactgaagtctaaattcatgtgaatctgcagGAGTCTACATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAG
                                                               |||   || | || | | |  |  | |||  |  ||    ||||   ||||   |  || ||   ||||| || | |   |   |  ||    | |  |  || |||| |||| |||||| |||||||||||||| ||||| |||||||| |||||  ||||  ||||||| |||||
---------------------------------------------------------------aactctcaaaccatttttgtgatgtgcattgtaaccttcaattg---cttgt--atcttccctggtttgatgctagaaaaataacagaaagt-tattgacttgtagGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATCAACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaaagttaccaattttgaagccaaactgaagtctaaattcatgtgaatctgcagGAGTCTACATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAG
                               gtctaaa  putative branch site (score: 3)
           aattttgaa  TA-rich tract