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...tatgataattattgtttactataggcaatgaatttattcaattccacttgtaaacaatatgaattggacagaaatagtgacacctcctccctttctgtagTCAACAAATTCATCTGCAGGATTACCAACTCAAATTCAGCTTGGATTACTTTCTCCCCTTTATTTGAGGCGGTTGTTTGAAAGCATGGGGGCAACCTATA
species | Vitis vinifera |
transcript | Vv13s0067g03210.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCAAGCAGTTATTAGAGTTGGTGGCGAGTGGCTAGCAGATGTATCACAG TCAACAAATTCATCTGCAGGATTACCAACTCAAATTCAGCTTGGATTACTTEST: gi|110723086|gb|EE099996.1|EE099996
genomic: TTCAAGCAGTTATTAGAGTTGGTGGCGAGTGGCTAGCAGATGTATCACAGgtagtcaaca ... ctttctgtagTCAACAAATTCATCTGCAGGATTACCAACTCAAATTCAGCTTGGATTACTT
EST: TTCAAGCAGTTATTAGAGTTGGTGGCGAGTGGCTAGCAGATGTATCACAG TCAACAAATTCATCTGCAGGATTACCAACTCAAATTCAGCTTGGGTTACTTEST: gi|26262463|gb|CA813526.1|CA813526
genomic: TTCAAGCAGTTATTAGAGTTGGTGGCGAGTGGCTAGCAGATGTATCACAGgtagtcaaca ... ctttctgtagTCAACAAATTCATCTGCAGGATTACCAACTCAAATTCAGCTTGGATTACTT
EST: TTCAAGCAGTTATTAGAGTTGGTGGCGAGTGGCTAGCAGATGTATCACAG TCAACAAATTCATCTGCAGGATTACCAACTCAAATTCAGCTNGGATTACTTEST: gi|110391735|gb|EC956734.1|EC956734
genomic: TTCAAGCAGTTATTAGAGTTGGTGGCGAGTGGCTAGCAGATGTATCACAGgtagtcaaca ... ctttctgtagTCAACAAATTCATCTGCAGGATTACCAACTCAAATTCAGCTTGGATTACTT
EST: TTCAAGCAGTTATTAGAGTTGGTGGCGAGTGGCTAGCAGATGTATCACAG TCAACAAATTCATCTGCAGGATTACCAACTCAAATTCAGCTTGGATTACTT
genomic: TTCAAGCAGTTATTAGAGTTGGTGGCGAGTGGCTAGCAGATGTATCACAGgtagtcaaca ... ctttctgtagTCAACAAATTCATCTGCAGGATTACCAACTCAAATTCAGCTTGGATTACTT
acttgtaaacaatatgaattggacagaaatagtgacacctcctccctttctgtagTCAACAAATTCATCTGCAGGATTACCAACTCAAATTCAGCTTGGATTACTTTCTCCCCTTTATTTGAGGCGGTTGTTTGAAAGCATGGGGGCAACCTATA
cacctcctccctttct CT-rich tract
taaacaatatgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgataattattgtttactataggcaatgaatttattcaattccacttgtaaacaatatgaattggacagaaatagtgacacctcctccctttctgtagTCAACAAATTCATCTGCAGGATTACCAACTCAAATTCAGCTTGGATTACTTTCTCCCCTTTATTTGAGGCGGTTGTTTGAAAGCATGGGGGCAACCTATA
- - - - - - - - - - - - -caatgaa
- - - - - - - - - - - - - - - - - - - - - -ccacttg
- - - - - - - - - - - - - - - - - - - - - - - - - -aaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acagaaa