Sequence
atgc intronic sequence ATGC exonic sequence...taaaattatgtttgttcctttttttttttgtaagatatctatcttttataaattacagtggtgaaatttggttatcctaacttcttagacctattggcagGGACGAGTATTATGCATGGGGACTGCACCAGATAGCTAAAGCTGTGAGCTTTTTGAATAATGACTGTAAGCTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AC218972.3_FGT001 (Zea mays), 3'ss of exon 3
-----------------------------------------------------taaaattatgtttgttcctttttttttttgtaagatatctatcttttataaat----tacagtggtgaaatttggttatcctaacttcttagacctattg--gcagGGACGAGTATTATGCATGGGGACTGCACCAGATAGCTAAAGCTGTGAGCTTTTTGAATAATGACTGTAAGCTA
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gtaccacagaacttgtagttttgtgtttaggaaatattcttttcagaaagaaacaatctgcagtttctagcattttttcatcaggttttagttctgttttgttaatgtttcctttttttggaatattggactactttgtcattatggctaatggtgcagAGATGAGTACTTTGCATGGGGGCTTCATCAGATATCCAAAGCTGTGAGCTTTCTCAATAATGACTGCAAACTT
upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G36180.1 (Glycine max), 3'ss of exon 3
taaaattatgtttgttcctttttttttttgtaagatatctatct-tttataaattacagtggtgaaatt---tggttatcctaacttcttagacctattggcagGGACGAGTATTATGCATGGGGACTGCACCAGATAGCTAAAGCTGTGAGCTTTTTGAATAATGACTGTAAGCTA
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----ggagagctttgactttgattttgctgtttagtatcagttggtttatgaattgagtaagtagcattcatttgttatatttgactccttgttggagttgtagGGATGAATATTATGCTTGGGGCCTGCATCAGATAGCAAAAGCTGTGAGCTTCTTAAATAATGATTGTAAACTT
upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G47590.1 (Glycine max), 3'ss of exon 3
----taaaattatgtttgttcctttttttttttgtaagatatctatct-tttataaattacagtggtgaaatttggttatcctaacttcttagacctattggcagGGACGAGTATTATGCATGGGGACTGCACCAGATAGCTAAAGCTGTGAGCTTTTTGAATAATGACTGTAAGCTA
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gacatccttttatgtttccttgtatgagtgactttgaagtatcaattggcccatgagttg-agtaatcagtggtagtca--cttgtttgtttgggctat--gtagGGATGAATATTATGCTTTGGGTCTTCATCAAATAGCTAAAGCTGTGAGCTTCTTGAATAATGATTGTAAACTT
upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G38740.1 (Glycine max), 3'ss of exon 3
----taaaattatgtttgttcctttttttttttgtaagatatctatct-tttataaattacagtggtgaaatttggttatcctaacttcttagacctattggcagGGACGAGTATTATGCATGGGGACTGCACCAGATAGCTAAAGCTGTGAGCTTTTTGAATAATGACTGTAAGCTA
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gacgtccttttatgtttccttgtatgactgactttgaagtatcaattggtccatgaattg-agtaatcagtggtagtca--cttgtttgtttgggctat--gtagGGATGAATATTATGCTTTGGGTCTTCATCAAATAGCTAAAGCTGTGAGCTTCTTGAATAATGATTGTAAACTT
upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G40730.1 (Arabidopsis thaliana), 3'ss of exon 3
-------------------------------------------taaaattatgt------ttgttcctttttttttttgtaa-gatatctat-cttttataaattacagtggtgaaatttggttatcctaacttctt------agacctattggcagGGACGAGTATTATGCATGGGGACTGCACCAGATAGCTAAAGCTGTGAGCTTTTTGAATAATGACTGTAAGCTA
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gtatgactcttattatgaggatctaggcatttaatctgttccaacaaattatgtcacactttaatctgtctttttttcataataatggctttgccactggacattatcatggtctgcatggtaaattttaattaccttccgaaaattttgcttttagGGATGAGTACTTTGCACTGGGGCTACACCAGATAGGTAAAGCTGTGAGCTTTCTGAACAATGACTGCAAACTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720124|gb|FC066744.1|FC066744EST: GGAATTAGGTTTAGAAGGTACACAAAG GGACGAGTATTATGCATGGGGACTGCACCAGATAGCTAAAGCTGTGAGCTT
genomic: GGAATTAGGTTTAGAAGGTACACAAAGgtacatatat ... ctattggcagGGACGAGTATTATGCATGGGGACTGCACCAGATAGCTAAAGCTGTGAGCTT
EST:
gi|122688567|gb|EC921023.1|EC921023EST: ATGCCACTGTCTGAAAAGATCAAGGAATTAGGTTTAGAAGGTACACAAAG GGACGAGTATTATGCATGGGGACTGCACCAGATAGCTAAAGCTGTGAGCTT
genomic: ATGCCACTGTCTGAAAAGATCAAGGAATTAGGTTTAGAAGGTACACAAAGgtacatatat ... ctattggcagGGACGAGTATTATGCATGGGGACTGCACCAGATAGCTAAAGCTGTGAGCTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttataaattacagtggtgaaatttggttatcctaacttcttagacctattggcagGGACGAGTATTATGCATGGGGACTGCACCAGATAGCTAAAGCTGTGAGCTTTTTGAATAATGACTGTAAGCTA
tcctaac putative branch site (score: 1)
tgaaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaaattatgtttgttcctttttttttttgtaagatatctatcttttataaattacagtggtgaaatttggttatcctaacttcttagacctattggcagGGACGAGTATTATGCATGGGGACTGCACCAGATAGCTAAAGCTGTGAGCTTTTTGAATAATGACTGTAAGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
-aaaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - agtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctaac