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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtaaagtcaaattttccaggaaagttccctctgctttaacctttttttaagcccttaattctttatttttatacttttctttttttctctccttccaagcagCAGTCATCCATCTTGAAGGAGGTTCCAGTTGTGATAATGTCATCAGAAAACATCCCAACTCGAATCAATAA

Basic information

species Vitis vinifera
transcript Vv13s0067g03070.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03070.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G14750.1 (Glycine max), 3'ss of exon 3
gttagtaaagtcaaattttccaggaaagttccctctgctttaaccttttttta-agcccttaattctttatttttatacttttctttttttctctccttccaagcagCAGTCATCCATCTTGAAGGAGGTTCCAGTTGTGATAATGTCATCAGAAAACATCCCAACTCGAATCAATAA
               | || |||     ||   |||  ||||  | ||   |  | ||  | ||    ||||  ||       |    |   |    ||  || ||| | || ||  |   ||||||||||||||| ||||| |||||||| || ||||| ||||| ||||| || ||
--------------gtatttcagctt--tttattcttttttactcattagatgcatccaatcatgtaatattaatagcaacaacaaactgcattcttttttaaacagGAATCGTCGGTAACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGAATTAACAA

upper sequence: Vv13s0067g03070.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G40100.2 (Glycine max), 3'ss of exon 3
gttagtaaagtcaaattttccaggaaagttccctctgctttaacctttttttaagcccttaattctttatttttatacttttctttttttctctccttccaagcagCAGTCATCCATCTTGAAGGAGGTTCCAGTTGTGATAATGTCATCAGAAAACATCCCAACTCGAATCAATAA-----------------------------
              |||||  ||     ||   |||  || |  | |   |  |  |  | || |  ||||  ||       |    |   |    ||  || ||| | || ||  |  |||||||||||||||| ||||| |||||||| || ||||| ||||| || || || ||                             
------------gtattttttagctt--tttattctttttgactcatagatgcattcaatcatgcgatattaatagcaaccacaaactgcattattttttaaacagGAATCGTCTGTAATGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAGTAAAATTCTTAACATTAGCTATATATAT

upper sequence: Vv13s0067g03070.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G40100.1 (Glycine max), 3'ss of exon 3
gttagtaaagtcaaattttccaggaaagttccctctgctttaacctttttttaagcccttaattctttatttttatacttttctttttttctctccttccaagcagCAGTCATCCATCTTGAAGGAGGTTCCAGTTGTGATAATGTCATCAGAAAACATCCCAACTCGAATCAATAA
              |||||  ||     ||   |||  || |  | |   |  |  |  | || |  ||||  ||       |    |   |    ||  || ||| | || ||  |  |||||||||||||||| ||||| |||||||| || ||||| ||||| || || || ||
------------gtattttttagctt--tttattctttttgactcatagatgcattcaatcatgcgatattaatagcaaccacaaactgcattattttttaaacagGAATCGTCTGTAATGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagcccttaattctttatttttatacttttctttttttctctccttccaagcagCAGTCATCCATCTTGAAGGAGGTTCCAGTTGTGATAATGTCATCAGAAAACATCCCAACTCGAATCAATAA
     ccttaat  putative branch site (score: 4)
           ttctttatttttatac  CT-rich tract
       ttaattctttattttt  TA-rich tract