1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtcttggattaattcagtcatggagattactttctaaattacatttgattagaactttggaaaagttttatagtactgttgtggcatgtcatttgggcagCTGAATACAGCCTATGATACGCTTACTTCAAAGAGACCGTGCGGACCCAGTAAACAAGCAATACGTGGAGCTACTTACGATCTAGCTAAAAATGACCCAT
species | Vitis vinifera |
transcript | Vv13s0067g02510.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGCACCAGCCGTTGCAATTGCTTACATGTTCTGGTTTTGTGGCATGGAT CTGAATACAGCCTATGATACGCTTACTTCAAAGAGACCGTGCGGACCCAGTEST: gi|110727344|gb|EE103999.1|EE103999
genomic: GGGCACCAGCCGTTGCAATTGCTTACATGTTCTGGTTTTGTGGCATGGATgtgagtgtct ... atttgggcagCTGAATACAGCCTATGATACGCTTACTTCAAAGAGACCGTGCGGACCCAGT
EST: GGGCACCAGCCGTTGCAATTGCTTACATGTTCTGGTTTTGTGGCATGGAT CTGAATACAGCCTATGATACGCTTACTTCAAAGAGACCGTGCGGACCCAGTEST: gi|26257091|gb|CA808154.1|CA808154
genomic: GGGCACCAGCCGTTGCAATTGCTTACATGTTCTGGTTTTGTGGCATGGATgtgagtgtct ... atttgggcagCTGAATACAGCCTATGATACGCTTACTTCAAAGAGACCGTGCGGACCCAGT
EST: GGGCACCAGCCGTTGCAATTGCT-ACATGTTCTGGTTTTGTGGCATGGAT CTGAATACAGCCTATGATACGCTTACTTCAAAGAGACCGTGCGGACCCAGTEST: gi|33405280|gb|CF210907.1|CF210907
genomic: GGGCACCAGCCGTTGCAATTGCTTACATGTTCTGGTTTTGTGGCATGGATgtgagtgtct ... atttgggcagCTGAATACAGCCTATGATACGCTTACTTCAAAGAGACCGTGCGGACCCAGT
EST: GGGCACCAGCCGTTGCAATTGCTTACATGTTCTGGTTTTGTGGCATGGAT CTGAATACAGCCTATGATACGCTTACTTCAAAGAGACCGTGCGGACCCAGT
genomic: GGGCACCAGCCGTTGCAATTGCTTACATGTTCTGGTTTTGTGGCATGGATgtgagtgtct ... atttgggcagCTGAATACAGCCTATGATACGCTTACTTCAAAGAGACCGTGCGGACCCAGT
tgattagaactttggaaaagttttatagtactgttgtggcatgtcatttgggcagCTGAATACAGCCTATGATACGCTTACTTCAAAGAGACCGTGCGGACCCAGTAAACAAGCAATACGTGGAGCTACTTACGATCTAGCTAAAAATGACCCAT
atttgat putative branch site (score: 5)
aaaagttttatagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcttggattaattcagtcatggagattactttctaaattacatttgattagaactttggaaaagttttatagtactgttgtggcatgtcatttgggcagCTGAATACAGCCTATGATACGCTTACTTCAAAGAGACCGTGCGGACCCAGTAAACAAGCAATACGTGGAGCTACTTACGATCTAGCTAAAAATGACCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - catggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgtc