1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatctttgtttatgaagaacctcaccatattcttcctgttgatgacaatggccacttttcatgtccctcattttatagGTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTAAAGAATATTAGGAGAAGAATGACTCCACAACCATTGAAAATTCGGGCTG
species | Vitis vinifera |
transcript | Vv13s0067g01710.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGAATTCCCTCACTCGTGAAGTTAAAGAAGTTGGCCCTGATGGACAGGAG GTGACAAGGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTAEST: gi|349810908|gb|FQ405896.1|FQ405896
genomic: TGAATTCCCTCACTCGTGAAGTTAAAGAAGTTGGCCCTGATGGACAGGAGgtaatctttg ... cattttatagGTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTA
EST: CGAATTCCCTCACTCGTGAAGTTAAAGAAGTTGGCCCTGATGGACAGGAG GTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTAEST: gi|110698113|gb|EE075755.1|EE075755
genomic: TGAATTCCCTCACTCGTGAAGTTAAAGAAGTTGGCCCTGATGGACAGGAGgtaatctttg ... cattttatagGTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTA
EST: TGAATTCCCTCACTCGTGAAGTTAAAGAAGTTGGCCCTGATGGACAGGAG GTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTAEST: gi|110720646|gb|EE096749.1|EE096749
genomic: TGAATTCCCTCACTCGTGAAGTTAAAGAAGTTGGCCCTGATGGACAGGAGgtaatctttg ... cattttatagGTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTA
EST: TGAATTCCCTCACTCGTGAAGTTAAAGAAGTTGGCCCTGATGGACAGGAG GTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTAEST: gi|71870361|gb|DT019416.1|DT019416
genomic: TGAATTCCCTCACTCGTGAAGTTAAAGAAGTTGGCCCTGATGGACAGGAGgtaatctttg ... cattttatagGTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTA
EST: TGAATTCCCTCACTCGTGAAGTTAAAGATGTTGGCCCTGATGGACAGGAG GTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTAEST: gi|32268823|gb|CD717982.1|CD717982
genomic: TGAATTCCCTCACTCGTGAAGTTAAAGAAGTTGGCCCTGATGGACAGGAGgtaatctttg ... cattttatagGTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTA
EST: TGAATTCCCTCACTCGTGAAGTTAAAGAAGTTGGCCCTGATGGACAGGAG GTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTAEST: gi|30305055|gb|CB981849.1|CB981849
genomic: TGAATTCCCTCACTCGTGAAGTTAAAGAAGTTGGCCCTGATGGACAGGAGgtaatctttg ... cattttatagGTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTA
EST: TGAATTCCCTCACTCGTGAAGTTAAAGATGTTGGCCCTGATGGACAGGAG GTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTAEST: gi|110401163|gb|EC967762.1|EC967762
genomic: TGAATTCCCTCACTCGTGAAGTTAAAGAAGTTGGCCCTGATGGACAGGAGgtaatctttg ... cattttatagGTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTA
EST: TGAATTCCCTCACTCGTGAAGTTAAAGATGTTGGCCCTGATGGACAGGAG GTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTAEST: gi|110686590|gb|EE064398.1|EE064398
genomic: TGAATTCCCTCACTCGTGAAGTTAAAGAAGTTGGCCCTGATGGACAGGAGgtaatctttg ... cattttatagGTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTA
EST: TGAATTCCCTCACTCGTGAAGTTAAAGAAGTTGGCCCTGATGGACAGGAG GTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTAEST: gi|110708703|gb|EE086544.1|EE086544
genomic: TGAATTCCCTCACTCGTGAAGTTAAAGAAGTTGGCCCTGATGGACAGGAGgtaatctttg ... cattttatagGTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTA
EST: TGAATTCCCTCACTCGTGAAGTTAAAGAAGTTGGCCCTGATGGACAGGAG GTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTA
genomic: TGAATTCCCTCACTCGTGAAGTTAAAGAAGTTGGCCCTGATGGACAGGAGgtaatctttg ... cattttatagGTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTA
accatattcttcctgttgatgacaatggccacttttcatgtccctcattttatagGTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTAAAGAATATTAGGAGAAGAATGACTCCACAACCATTGAAAATTCGGGCTG
cttttcatgtccctc CT-rich tract
tcattttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatctttgtttatgaagaacctcaccatattcttcctgttgatgacaatggccacttttcatgtccctcattttatagGTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTAAAGAATATTAGGAGAAGAATGACTCCACAACCATTGAAAATTCGGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA