Sequence
atgc intronic sequence ATGC exonic sequencegtataggatctctgtttgtcaagcttgaatatttgtttatgcctttgatgcttgacaagaagaacgagttagtactggaactattagttaaatcatgaaattatgcatatgcatttcaaatgatatttatctaattttttgcaactgcaagGCTAGGGAGTTCCTTTACTTCAAGATCTATGGAAAACAATGCATCACTCCTGTTGCAATTATGACAAGTGCAGCAAAGAACAACCACGAACATATCACTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g01470.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G35520.1 (Glycine max), 3'ss of exon 3
gtataggatctctgtttgtcaagcttgaatatttgtttatgcctttgatgcttgacaagaagaacgagttagtactggaactattagtta-aatcatgaaattatgcatatgcatttcaaatgatatttatctaattttttgcaactgcaagGCTAGGGAGTTCCTTTACTTCAAGATCTATGGAAAACAATGCATCACTCCTGTTGCAATTATGACAAGTGCAGCAAAGAACAACCACGAACATATCACTT
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---------------------------------------------------------------gtatattagatatccaactatcaaacacaatcgtac-----ttcttatgcccactgaaatatctatttctgctgtttcacatttg-aagGCTAGGGAATTCTTGTACTTCAAGTTATATGGGAAACAATGCATCACACCTGTTGCAATAATGACAAGTTCTGCAAAGAACAACCACAAACATGTCACCT
upper sequence: Vv13s0067g01470.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G02900.1 (Glycine max), 3'ss of exon 3
gtata-ggatctctgtttgtcaagcttgaatat-ttgtttatgcctttgatgcttgacaagaagaacgagttagtactggaactattagttaaatcatgaaattatgcatatgcatttcaaatgatatttatctaattttttgcaactgcaagGCTAGGGAGTTCCTTTACTTCAAGATCTATGGAAAACAATGCATCACTCCTGTTGCAATTATGACAAGTGCAGCAAAGAACAACCACGAACATATCACTT
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gtatatagatataccactatcaaacacaatcatacttcttatgccc--aattttttttaataaaatggagacaagatt--aatcatttat-----------gctgggcgtggaaatatctaat--------tctgctgtttcacatttg-aagGCTAGAGAATTCTTGTACTTCAAGTTATATGGGAAACAATGCATCACACCTGTTGCAATAATGACAAGTTCCGCAAAGAACAACCACAAACATGTCACCT
upper sequence: Vv13s0067g01470.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G56040.1 (Arabidopsis thaliana), 3'ss of exon 3
gtataggatctctgtttgtcaagcttgaatatttgtttatgcctttgatgcttgacaagaagaacgagttagtactggaactattagttaaatca-tgaaattatgcatatgcatttcaaatgatatttatc-taattttttgcaactg-caagGCTAGGGAGTTCCTTTACTTCAAGATCTATGGAAAACAATGCATCACTCCTGTTGCAATTATGACAAGTGCAGCAAAGAACAACCACGAACATATCACTT
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-------------gtacatgtgcactcatttcttggtgactctgggtgggtttgtctacatttaaatgtatgaaaggaaactttgaggtacgaaactgtatttgttcatgtcattagaaaatgttatttatccttttttcccggaattggctagGCTAGAGAGTTCCTTTACTTCAAACTTTATGGAAAGCAATGTGTCACACCTGTTGCCATTATGACAAGTGCTGCAAAGAACAACCATGAGCATGTAAGTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaaattatgcatatgcatttcaaatgatatttatctaattttttgcaactgcaagGCTAGGGAGTTCCTTTACTTCAAGATCTATGGAAAACAATGCATCACTCCTGTTGCAATTATGACAAGTGCAGCAAAGAACAACCACGAACATATCACTT
atctaat putative branch site (score: 3)
ttttttgc CT-rich tract
atatgcatttcaaatg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtataggatctctgtttgtcaagcttgaatatttgtttatgcctttgatgcttgacaagaagaacgagttagtactggaactattagttaaatcatgaaattatgcatatgcatttcaaatgatatttatctaattttttgcaactgcaagGCTAGGGAGTTCCTTTACTTCAAGATCTATGGAAAACAATGCATCACTCCTGTTGCAATTATGACAAGTGCAGCAAAGAACAACCACGAACATATCACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC