Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttatttgcatatgcatctccagtaaacttatttctgttccattgtttgaactgaattacttcggtctcacttttttctctctggcttgctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGTCCCGGCTGTTTTCACTGGAGACACATTG

Basic information

species Vitis vinifera
transcript Vv13s0067g00180.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g00180.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G38460.1 (Glycine max), 3'ss of exon 2
--tgttatttgcatatgcatctccagtaaacttatttctgttccattgtttgaactgaattacttcggtctcacttttttctctctggcttgctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGTCCCGGCTGTTTTCACTGGAGACACATTG
    || |||   |||   | |   ||   ||  |  |  ||| |   |    ||    |||| ||  |        |   |   |    ||  ||  |||| || |||   ||||| |||||||||||||| || ||||||||||| ||    ||||||||||| |||||||| ||||||
atcattcttttggtat-tgtttgatgtttgct-gtaacaattcaaccttgcttacatgtttacctctcttgttaacataagttatttctgtgacttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAACCGGCTGTTTTTACTGGAGATACATTG

upper sequence: Vv13s0067g00180.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G36610.2 (Glycine max), 3'ss of exon 3
-------tgttatttgcatatgcatctccagtaaacttatttctgttccattgtttgaactga-attacttcggtctcacttttttctctctggcttgctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGTCCCGGCTGTTTTCACTGGAGACACATTG
       | || |||| || |    |   ||  |   ||  ||  || |||  ||    ||    |||       |  |  || || ||| || ||||||     ||| || |||   ||||| |||||||||||||| || ||||||||||| ||    ||||||||||| |||||||| ||||||
ctattagtattgtttg-atgtttg-cggtagcgattctacctcgcttacatgtttccctctcttgttagcattaacataagttatt-tctgtgacttgct-----cagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAACCGGCTGTTTTTACTGGAGATACATTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29783239|gb|CB349281.2|CB349281
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110375070|gb|EC940027.1|EC940027
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110719057|gb|EE096594.1|EE096594
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGAAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110709500|gb|EE085016.1|EE085016
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGAAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|33402644|gb|CF208271.1|CF208271
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110383780|gb|EC948180.1|EC948180
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110380907|gb|EC946209.1|EC946209
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|349833114|gb|FQ416492.1|FQ416492
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110719007|gb|EE096488.1|EE096488
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110414288|gb|EC980115.1|EC980115
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110720415|gb|EE096315.1|EE096315
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGG-AAGAGAGGAAGATG
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAA-AGAGGAAGATG
EST: gi|110719311|gb|EE097144.1|EE097144
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGAAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110724872|gb|EE101081.1|EE101081
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGAAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110719154|gb|EE096803.1|EE096803
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|37183792|gb|CF603146.1|CF603146
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110396845|gb|EC962547.1|EC962547
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110719031|gb|EE096544.1|EE096544
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGAAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110720309|gb|EE096118.1|EE096118
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110372803|gb|EC936995.1|EC936995
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110716814|gb|EE092126.1|EE092126
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|30252909|gb|CB970460.1|CB970460
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110392028|gb|EC957151.1|EC957151
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|34545999|gb|CF514231.1|CF514231
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|294966826|gb|GW837845.1|GW837845
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|30133817|gb|CB919156.1|CB919156
EST:     GCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: GCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|34545007|gb|CF513239.1|CF513239
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110719061|gb|EE096606.1|EE096606
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGAAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110718231|gb|EE094824.1|EE094824
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|161707122|gb|FC056385.1|FC056385
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTC
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTC
EST: gi|110712058|gb|EE089243.1|EE089243
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGAAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110398276|gb|EC964521.1|EC964521
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110713331|gb|EE089158.1|EE089158
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGAAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110411105|gb|EC976807.1|EC976807
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110719682|gb|EE095023.1|EE095023
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGAAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|33402734|gb|CF208361.1|CF208361
EST:     AAGCTGTCGCTTGGCTTTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110719339|gb|EE097204.1|EE097204
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110696356|gb|EE072399.1|EE072399
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGAAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110719501|gb|EE094682.1|EE094682
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTATGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGAAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110718538|gb|EE095483.1|EE095483
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGAAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110690740|gb|EE068165.1|EE068165
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGAAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110711424|gb|EE087889.1|EE087889
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGAAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110720542|gb|EE096554.1|EE096554
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110719009|gb|EE096498.1|EE096498
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGAAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110386430|gb|EC951024.1|EC951024
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110423791|gb|EC990142.1|EC990142
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110719323|gb|EE097164.1|EE097164
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCGTACAAGGGGTCACATAAGTTACTATGTGACAGGAAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110709187|gb|EE084430.1|EE084430
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGAAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110382708|gb|EC947025.1|EC947025
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|34319926|gb|CF372680.1|CF372680
EST:     TGTCGCTGGGCTCTGATCTCGCCGTTTGGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
genomic: TGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT
EST: gi|110720705|gb|EE096871.1|EE096871
EST:     AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTG                         TCATACAAGGGGTCACATAAGTTACTATGTGACAGGAAAAGAGGAAGATGT
genomic: AAGCTGTCGCTTGGCTCTGATCTCGCCGTTTTGGCTCTTCACACTCCTTGgtaattttct ... ctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgaactgaattacttcggtctcacttttttctctctggcttgctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGTCCCGGCTGTTTTCACTGGAGACACATTG
                    gtctcac  putative branch site (score: 3)
                     tctcacttttttctct  CT-rich tract
          aattactt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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tgttatttgcatatgcatctccagtaaacttatttctgttccattgtttgaactgaattacttcggtctcacttttttctctctggcttgctttcatcagTCATACAAGGGGTCACATAAGTTACTATGTGACAGGCAAAGAGGAAGATGTCCCGGCTGTTTTCACTGGAGACACATTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - gcatatg
- - - - - - - -catctcc
- - - - - - - - - - - agtaaac
- - - - - - - - - - - - - - - - - - - ttccatt