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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATTATGTTG

Basic information

species Vitis vinifera
transcript Vv13s0064g00880.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os07g33979.1 (Oryza sativa), 3'ss of exon 3
gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATTATGTTG
   |   | | |   |||||    |||       |      | |  ||   ||    ||   |  |      || ||  |   |     |||||   | ||||||||||||||||||| |||||||| || ||||||||||| |||||||| ||||| || ||                                         
-gtattatttcattgtcaag----actccagagctgaaaattatcatgaatcattattttgctggatgtg-ttggatgctcacttgcataattgttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAA----------------------------------------

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os07g33860.1 (Oryza sativa), 3'ss of exon 3
gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATTATGTTG
      || ||     |||  |  |  ||     |      | |  ||   ||     |  ||  |      || ||  |   |     ||||    | |||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||||| || ||     |  ||| | |  |     | | | | || | || | 
------gtattt-ttgcaatgtgaagattcaagctgaaaattctcatgaatcagtatctttttagatgtg-ttggatgctcacttacataattattctgtgcagAGGTGCAAGCATTTTGAAATTGGTGGAGACAAGAAGGGCAAGGGAACGTCTCTTTTCTAAACTACCTACTGGATACTGAAGTTGTGGGTCTACTGTGCTT

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATTATGTTG------
   |   | | |   |||||    |||       |      | |  ||   ||    ||   |  |      || ||  |   |     |||||   | ||||||||||||||||||| |||||||| || ||||||||||| |||||||| ||||| || ||    ||     | |  |  | |    | ||||| | |||||      
-gtattatttcattgtcaag----actccagagctgaaaattatcatgaatcattattttgctggatgtg-ttggatgctcacttgcataattgttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGC-----TTGCTACCTACTGGATACTATAGT-TGTTGGTCTAC

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os07g33921.1 (Oryza sativa), 3'ss of exon 3
gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacaca-actgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATTATGTTG
   |   | | |   |||||   ||   |     |  |      ||  | |  |    |  ||||| |     ||  |  |   |      |||    ||| ||||||||||||||||| |||||||| || ||||||||||| |||||||| ||||| || ||     |  ||| | |  |     | | | | |||| || | 
-gtattatttcattgtcaagactcaagctgaaaattgt----catgaatcaatcagtatctttttagatgtgttgggtgctatcttacattattattctttacagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAACTACCTACTGGATACTGAAGTTGTGGGTCTATTGTGCTT

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os07g33915.1 (Oryza sativa), 3'ss of exon 2
gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATTATGTTG
      || ||     |||  |  |  ||     |      | |  ||   ||     |  ||  |      || ||  |   |     ||||    | |||||||||||||||||||| | ||||| || ||||||||||| |||||||| ||||| || ||                                         
------gtattt-ttgcaatgtgaagattcaagctgaaaattctcatgaatcagtatctttttagatgtg-ttggatgctcacttacataattattctgtgcagAGGTGCAAGCATTTTAAAATTGGTGGAGACAAGAAGGGCAAGGGAACGTCTCTTTTCTAA----------------------------------------

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os07g26740.1 (Oryza sativa), 3'ss of exon 3
gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaa---ctgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCT-TGCTATATTATGTTG
|||    ||    | |  |||| |  |||| ||||||| |   |  ||||| | |  |   ||||  | ||       |    | ||||||||||  |  ||  |||||||||||||| ||||| || || || ||||||||||| ||||||||||| ||||| || || ||  |  | | | | |||  |  | || |   | |   
gtctttatcaatgctttcagcttctttttttttttcctcctcatcatgttatagcattcggttttttagaagcatctgacccgtcttgttgcaatctgactt--cagAGGTGCAAGCACTTTGAAATCGGTGGAGACAAGAAGGGCAAGGGAACTTCACTCTTCTAAGATGCTGATATTGCCCTGTTCCCCAATTCTCTGCCAGGAG-

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
gt-cagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGC-TATATTATGTTG
|| ||| |||| |   ||  |    |   ||  | |  |||     || ||    | |||   ||||    |||   |  |   ||   ||  || ||    |||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||| || |   |  | | |  ||| |   | |||  |  |   ||| |
gtgcagtgtctcattttcctgtgttaggcttgctgt--tgcacaaagtattgtctcactttgatttagctcactctttcctgactgactcacctgtgtc--acagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCA-TCGCCCATCTCGATGTTGGATCGAACCTGTGG

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G125527_T02 (Zea mays), 3'ss of exon 3
gtcagagtcttaacctcaagctacacttttct-tttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATTATGTTG
      ||  |  | | |  || |  |  |    || ||||  |        ||   ||   ||    | | || | | |||| ||   |  |   || |  ||||| |||||||||||||||||||| || ||||||||||| ||||| || ||||| || || |   |           | |   | |||   |       ||
------gtactgtcttgattctcccgtgctaaacttgctgc--tgaacaaagcatttctccattggttatagctcactctttgctgactccct---gtgtcacagAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGCACATCTCTTTTCTAAGCTTCTCGTCCACCTGTCTGGTTGTTGAGTTGAAGCTGTG

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G103059_T01 (Zea mays), 3'ss of exon 3
gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATTATGTTG
                                                 ||| |||  |     |     |  ||    |  ||| |        || |  |||||||||||||||||||||||||| || |||||||| || ||||| || ||||| || ||                                         
------------------------------------------------gtactccctgtgtccattggttatagatcactctttgcttactccctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAATGGCAAGGGCACGTCTCTTTTCTAA----------------------------------------

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G160351_T01 (Zea mays), 3'ss of exon 3
gtcagagtcttaacc-tcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAG----GCAAACTTGGTCATTTTCGTCTTGCTATATTATGTTG
      ||||| ||   || ||| || | || | | ||   | ||||||||     | ||          | || |   |||||  ||  | ||        |||||||||||||| |||||||| || || |||||||| || |||||||| ||||| || || | |      ||||||| |||   ||       | | | |     
------gtctttacggccatgcttcattattttgtgccc-tcgtttgtgttttgttctttga--------agctaa--ctttgtcctttaactt--------cagAGGTGCAAGCACTTTGAGATCGGTGGTGACAAGAAAGGCAAGGGAACCTCTCTGTTCTAAGCGTATCATAAACTTGCTCAGGGTCTCAAGTATCTGTCAG----

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G160351_T03 (Zea mays), 3'ss of exon 2
gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttg----cagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATTATGTTG
     | ||| |||  |     |   | ||     ||   |||   | ||     || |  |||        |   | ||||  | |    |||   |||     |||||||||||||| |||||||| || || |||||||| || |||||||| ||||| || ||                                         
-----actctcaacacccgatcaaggtctttacggccatgcttcattattttgtgccctcgttt---gtgttttgttctttgaagctaactttgtcctttaacttcagAGGTGCAAGCACTTTGAGATCGGTGGTGACAAGAAAGGCAAGGGAACCTCTCTGTTCTAA----------------------------------------

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G19320.1 (Glycine max), 3'ss of exon 3
gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATTATGTTG--
|| ||  | |       || | | ||  |  |||       || | ||  |       | || |    | | ||  || ||  |||     |||  || |||||||||||||||| ||||||||||| || ||||||||||| |||||||| ||||| || |||   || || | ||  |||  |  |||  ||| ||        
gttagtatatgg----taaacaaaacaatggtttaaagtggttgtttggcatg-----tgctgtgtggctaatggtttgttcctgtctatgttg--ttgtgcagAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGG--ATTCGCAGCTTTTTATGTTTCAGCAAT

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATT------ATGTTG-----------------------------
|| ||  | |       || | | ||  |  |||       || | ||  |       | || |    | | ||  || ||  |||     |||  || |||||||||||||||| ||||||||||| || ||||||||||| |||||||| ||||| || |||   || || | ||  |||  |  |||  ||| ||      ||||||                             
gttagtatatgg----taaacaaaacaatggtttaaagtggttgtttggcatg-----tgctgtgtggctaatggtttgttcctgtctatgttg--ttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGG--ATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 3
gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATTA-TGTTG-
                     ||       |  |   ||| ||||  ||| ||     |   |     | | ||  | || |||  ||    |  ||| |||||||||||||||| ||||||||||| || ||||||||||| |||||||| || ||||| |||   |  || | ||  ||||    |||  | | | |    || 
------------------gtatatggaaagcaatggatgcttttttggttccatgtggtgtgtg---gctaatggttgttagttcctgt--ctatgttgtgcagAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACATCACTCTTCTAGTTTGAGAATTAGG--ATTTAGAGCTTTATGTTTCAGCAATGT

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G05670.1 (Glycine max), 3'ss of exon 3
gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATTA-TGTTG-
|| ||  | |  |   |||   |  ||||| |  | |    |  |||||  |                  | ||  | || |||  ||    |  ||| |||||||||||||||| ||||||||||| || ||||||||||| |||||||| || ||||| |||   |  || | ||  ||||    |||  | | | |    || 
gttagtatatggaaagcaatggatgcttttttggttccatgtggtgtgtggct-----------------aatggttgttagttcctgt--ctatgttgtgcagAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACATCACTCTTCTAGTTTGAGAATTAGG--ATTTAGAGCTTTATGTTTCAGCAATGT

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G24930.1 (Glycine max), 3'ss of exon 3
gtcagagtcttaacctcaagctacactttt--cttttcctgccttttgtgttacaccccttacttttacaca-actgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATTATGTTG--
         ||  |||||| |   | ||||  |  |   | ||     || | ||   |    ||  ||||    |  ||  ||| | | |   ||  |||||||||||||||||||| |||||||| || || ||||||||||| || ||||| |||||||| |||  || | | | |   |||| |   ||   | | | | |    
-----tacttttgcctcaaacagtaattttgccactgattcccaaacatgct-cattgccgttttgaacacgtggttgatgcttgctat-gtggttctgttttgcagAGGTGCAAGCACTTTGAGATCGGTGGTGACAAGAAGGGAAAAGGAACATCTCTCTTCTAGATGGAATATTAGA--ATTTGCAATTTCACACACTCTCTGTAC

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G08030.1 (Glycine max), 3'ss of exon 3
--gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATTATGTTG
   | || ||||   ||    | | |  |||| ||||  || | |||   |  |    || |   || |    ||    || |||| ||||          ||||||||||||||||||||||||| || || ||||||||||| || ||||| ||||| || |||                                        
gtataagcgtctcttcccgtcgtttcgtttttgtttt--tgtcgttttgatcgcgtggctgatgcttgctttcctc--cttctgtttttgc---------ctgcagAGGTGCAAGCATTTTGAGATCGGTGGTGACAAGAAGGGAAAAGGAACCTCTCTGTTCTAG----------------------------------------

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G14320.1 (Arabidopsis thaliana), 3'ss of exon 3
gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATTATGTTG
          |||  ||    | |    |||||| |||     ||||    ||| | ||| | | |     |||  | ||     |||    ||| ||||||||||||||||||| |||||||| || || ||||||||||| |||||||| ||||||||||| |  |     |     || | | | ||  | | || | | |
---------gtaatgtc----tgcgacattctttacct-----ttgttaatcactctttagtctcagtt--ctgtttcttacactttgtgtgtggtttttgcagAGGTGCAAGCACTTTGAGATCGGTGGAGACAAGAAGGGAAAGGGAACATCTCTCTTTTAAGTTGTTGTTTCATCTATCTACTTTTTTTTGTTTTGTTTGG

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGG--AGGCAAACTTGGTCATTTTCGTCTTGCTATATTATGTTG
    | |  |  | |  |     || ||   | | || |  || |   ||       || |||  |      ||    |||||||||         | || ||||||||||||||||| ||||| || || ||||||||||| |||||||| ||||| ||||| |   |    |  |  |  | | ||  ||  | || | || ||
----gtgcatagaacatagat--cagttcattataccggatttgtaacttg-gtaatttgcttacattgtgttgg---tttgttgtt---------tatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTT-TTGTACT-TGCTG

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S6_198V6.1 (Physcomitrella patens), 3'ss of exon 4
----------------------------------------------------------------------------------------gtcagagtcttaacctcaagct-----acacttttcttttcctgccttttgtgtta-caccccttactt-ttacacaactgaatttttgttgttgcaattgg-gttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATTATGTTG
                                                                                          ||   |||      |    |     | |  ||| |  |   |||  |    | | |||     || |    |||  |  |   | |        | ||||   | ||||| | |||||||| |||||||||||||| ||||||||||| ||||| |||   ||||| ||||   |    ||||      |||  |    |  |||    |
gtaattcaatctattttcttgctggtagttgattggtttgacaaatattcatgtggaattttgcaacggaattgtcattgtaggtgtaaccattctctcctgtccgtattttctgaaatctttatcatttcgccgatcaaataatcactaggaacgtaccccacttcaaagagtctaacacatgacttggtactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAGCTCTTCTAGGCAACTCGATTGGATTACCTCGCTTCTGAACTTTAGAGAG

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S74_73V6.1 (Physcomitrella patens), 3'ss of exon 4
gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATTATGTTG--
      || |      |      |    |  | ||   | || ||   ||||       |   | |  |  | |     |     |   | |    |||||||| | |||||||| || ||||||||||| ||||||||||| ||||| ||    || |||||     ||    |  | |||    | ||   ||  |    ||  
----tggtttcgcgtgcggaagccctcatagtgttttagtctctttgcttacttgaacaatcctcaggcttcaggtgactaacactcaaagtgatattttgcagCGCTGCAAGCACTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACCCAACTTTTTTAAACTACATGTCT--TAATTGAAATGTTAAAATTGTGGACTGGT

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S115_63V6.1 (Physcomitrella patens), 3'ss of exon 4
gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTC--ATTTTCGTCTTGCTATATTATGTTG
         ||   ||   |    || | || ||||   |     || | |||    | ||   |  |           |  |   |   |||   || ||||| | ||||||||||| ||||||||||| ||||||||||| ||||| |||   ||||| ||||   ||     ||||  | |   |||| |     | ||    
----ctccttttctctggggtgttacgtctcatttctctcaagcggtttcacaatgatcacccctcaatttgaagggcctaatacgtagtattaaattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAGCTCTTCTAGGCATCACGTCAGGTCCAACTAGAGTCTGGAGTGTTGATAA--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30135051|gb|CB920389.1|CB920389
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|71890851|gb|DT039906.1|DT039906
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110402492|gb|EC960255.1|EC960255
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110394697|gb|EC959942.1|EC959942
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110700010|gb|EE077558.1|EE077558
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|71868045|gb|DT017100.1|DT017100
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|22007688|gb|BQ792722.1|BQ792722
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTTT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110420674|gb|EC986950.1|EC986950
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110361090|gb|EC924543.1|EC924543
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110361862|gb|EC925364.1|EC925364
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110400917|gb|EC967504.1|EC967504
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|30137977|gb|CB923315.1|CB923315
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|352794709|gb|FQ475207.1|FQ475207
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110417524|gb|EC983588.1|EC983588
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|71871501|gb|DT020556.1|DT020556
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110695514|gb|EE073619.1|EE073619
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110415815|gb|EC981750.1|EC981750
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110371374|gb|EC935347.1|EC935347
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110717588|gb|EE093586.1|EE093586
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110426407|gb|EC992814.1|EC992814
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110706762|gb|EE082572.1|EE082572
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110411382|gb|EC977093.1|EC977093
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|34547028|gb|CF515260.1|CF515260
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110715681|gb|EE094010.1|EE094010
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110715889|gb|EE094458.1|EE094458
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110385804|gb|EC950360.1|EC950360
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110733241|gb|EE109259.1|EE109259
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110404211|gb|EC968920.1|EC968920
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110401167|gb|EC967767.1|EC967767
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110688700|gb|EE067548.1|EE067548
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110730484|gb|EE107616.1|EE107616
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110702010|gb|EE080238.1|EE080238
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110407406|gb|EC973006.1|EC973006
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|34416086|gb|CF414840.1|CF414840
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110694552|gb|EE071756.1|EE071756
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACATGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110691265|gb|EE069167.1|EE069167
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACATGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110399167|gb|EC965660.1|EC965660
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110697783|gb|EE075161.1|EE075161
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACATGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110691638|gb|EE069972.1|EE069972
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|51051605|gb|CO819140.1|CO819140
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110399415|gb|EC965920.1|EC965920
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|22015037|gb|BQ800071.1|BQ800071
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACATGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110705546|gb|EE082520.1|EE082520
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|352795122|gb|FQ477232.1|FQ477232
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110373932|gb|EC938939.1|EC938939
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110365043|gb|EC928753.1|EC928753
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110702254|gb|EE080754.1|EE080754
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
EST: gi|110730485|gb|EE107617.1|EE107617
EST:     TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG                         AGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT
genomic: TGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtct ... ggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGCTATATTATGTTG
     cccttac  putative branch site (score: 3)
                         aatttttgtt  TA-rich tract