1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tctaaaagggacctttgaacttcaatgttccttcataggcttgttaagaattgctgactctgtaatccattctgagcaattaatcgcatttgtcatgtagTGCATTACAGGGCATGGACTGAAAGCACCCAGCACAAGTTTGAAGACACATGGAATGAACAACGTCCAGTTGAAATAGTCATAGGAAAAG
species | Vitis vinifera |
transcript | Vv13s0064g00580.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATGAAGGAAGGTCATGGTCAGAAACCATCCAAATACTCAACATGTTTCT TGCATTACGGGGCATGGACTGAAAGCACCCAGCACAAGTTTGAAGACACATEST: gi|110385321|gb|EC949833.1|EC949833
genomic: CATGAAGGAAGGTCATGGTCAGAAACCATCCAAATACTCAACATGTTTCTgtaagtatca ... tgtcatgtagTGCATTACAGGGCATGGACTGAAAGCACCCAGCACAAGTTTGAAGACACAT
EST: CATGAAGGAAGGTCATGGTCAGAAACCATCCAAATACTCAACATGTTTCT TGCATTACAGGGCATGGACTGAAAGCACCCAGCACAAGTTTGAAGACACATEST: gi|30304226|gb|CB981020.1|CB981020
genomic: CATGAAGGAAGGTCATGGTCAGAAACCATCCAAATACTCAACATGTTTCTgtaagtatca ... tgtcatgtagTGCATTACAGGGCATGGACTGAAAGCACCCAGCACAAGTTTGAAGACACAT
EST: CATGAAGGAAGGTCATGGTCAGAAACCATCCAAATACTCAACATGTTTCT TGCATTACGGGGCATGGACTGAAAGCACCCAGCACAAGTTTGAAGACACATEST: gi|87584069|gb|DY473366.1|DY473366
genomic: CATGAAGGAAGGTCATGGTCAGAAACCATCCAAATACTCAACATGTTTCTgtaagtatca ... tgtcatgtagTGCATTACAGGGCATGGACTGAAAGCACCCAGCACAAGTTTGAAGACACAT
EST: CATGAAGGAAGGTCATGGTCAGAAACCATCCAAATACTCAACATGTTTCT TGCATTACAGGGCATGGACTGAAAGCACCCAGCACAAGTTTGAAGACACAT
genomic: CATGAAGGAAGGTCATGGTCAGAAACCATCCAAATACTCAACATGTTTCTgtaagtatca ... tgtcatgtagTGCATTACAGGGCATGGACTGAAAGCACCCAGCACAAGTTTGAAGACACAT
aagaattgctgactctgtaatccattctgagcaattaatcgcatttgtcatgtagTGCATTACAGGGCATGGACTGAAAGCACCCAGCACAAGTTTGAAGACACATGGAATGAACAACGTCCAGTTGAAATAGTCATAGGAAAAG
aattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaaaagggacctttgaacttcaatgttccttcataggcttgttaagaattgctgactctgtaatccattctgagcaattaatcgcatttgtcatgtagTGCATTACAGGGCATGGACTGAAAGCACCCAGCACAAGTTTGAAGACACATGGAATGAACAACGTCCAGTTGAAATAGTCATAGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- -aaaaggg
- - - - - - - - - - - caatgtt
- - - - - - - - - - - - - - -ccttcat
- - - - - - - - - - - - - - - - - - -ggcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - -tgctgac