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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatactgagaaaagtttaaaccagaaatatattttgaattaatttagcagtgcaagctactatttcttttatgaaacttaacataatttatggggatgaatgatttgaccagGTCAGCTTCGTAAATAGTATCGCCACGATCAAGGGTGGGACTCATGTTGATTACGTTACCAACCAGATTGCAAACTTTGTAATGAGTATTGTCAATAAGA

Basic information

species Vitis vinifera
transcript Vv13s0064g00560.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g00560.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G43170.1 (Glycine max), 3'ss of exon 3
gtaatactgagaaaagtttaaaccagaaatatattttgaattaatttagcagtgcaagctactatttcttttatgaaacttaacataatttatggggatgaatgatttgaccagGTCAGCTTCGTAAATAGTATCGCCACGATCAAGGGTGGGACTCATGTTGATTACGTTACCAACCAGATTGCAAACTTTGTAATGAGTATTGTCAATAAGA
||||  ||    |   ||| |  || |  ||  | |||   || || |    ||  | ||    ||| | |||   | | |    |||||| |            ||| ||||||||||||| || |||   || || || ||||||||||||||||||||||||||||| ||||| |||||| |||||||||| |||| ||  || |||||||
gtaa--ctagtgagcttttgaggcaaagttacttcttgg--tagttcattgttgttatctt---tttgtcttacacaccgt----taatttgt------------ttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGATTACGTCACCAATCAGATTACAAACTTTGTGATGAATAAAGTAAATAAGA

upper sequence: Vv13s0064g00560.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G11610.1 (Glycine max), 3'ss of exon 3
gtaatactgagaaaagtttaaaccagaaatatattttgaattaatttagcagtgcaagctactatttcttttatgaaacttaacataatttatggggatgaat-gatttgaccagGTCAGCTTCGTAAATAGTATCGCCACGATCAAGGGTGGGACTCATGTTGATTACGTTACCAACCAGATTGCAAACTTTGTAATGAGTATTGTCAATAAGA
                             |   |   ||  ||||  ||||  |  |  |  |  |  || |    | |||    |  |  |    | | | | | ||| ||||||||||||| || |||   || || || ||||||||||||||||||||||||||||| ||||| |||||| |||||||||| |||| ||  || |||||||
----------------------------gtgactagcgagctaatgaagcaaagttacttcttggtagttattgttatctttttgtcttacacaccgttaatttgtttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGATTACGTCACCAATCAGATTACAAACTTTGTGATGAATAAAGTAAATAAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactatttcttttatgaaacttaacataatttatggggatgaatgatttgaccagGTCAGCTTCGTAAATAGTATCGCCACGATCAAGGGTGGGACTCATGTTGATTACGTTACCAACCAGATTGCAAACTTTGTAATGAGTATTGTCAATAAGA
                  acttaac  putative branch site (score: 3)
     tttcttttatgaaact  TA-rich tract