1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtcagtcttgggttgcttaatacacttgtctacttatcaattgtatagacccctttcattgtgaaatggaattgaattatgtataaaataaatgttatagATAGCTGCATATGGGAAAGGTTTTGTGAAGGCATCACAAGACACTTGGGAGCTCTTTGAAAAGAGAGGAAAGGAAATGGAAGCCATCGTTGATTCTGACA
species | Vitis vinifera |
transcript | Vv13s0064g00030.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATATCATGGAGTCCATCTTCAGATATGGCAATGGCTGGGCCTATGTACAG ATAGCTGCATATGGGAAAGGTTTTGTGAAGGCATCACAAGACACTTGGGAGEST: gi|110371335|gb|EC935277.1|EC935277
genomic: ATATCATGGAGTCCATCTTCAGATATGGCAATGGCTGGGCCTATGTACAGgtatcacaac ... aatgttatagATAGCTGCATATGGGAAAGGTTTTGTGAAGGCATCACAAGACACTTGGGAG
EST: AGATATGGCAATGGCTGGGCCTATGTACAG ATAGCTGCATATGGGAAAGGTTTTGTGAAGGCATCACAAGACACTTGGGAGEST: gi|110703724|gb|EE080819.1|EE080819
genomic: AGATATGGCAATGGCTGGGCCTATGTACAGgtatcacaac ... aatgttatagATAGCTGCATATGGGAAAGGTTTTGTGAAGGCATCACAAGACACTTGGGAG
EST: ATATCATGGAGTCCATCTTCAGATATGGCAATGGCTGGGCCTATGTACAG ATAGCTGCATATGGGAAAGGTTTTGTGAAGGCATCACAAGACACTTGGGAGEST: gi|110726873|gb|EE103034.1|EE103034
genomic: ATATCATGGAGTCCATCTTCAGATATGGCAATGGCTGGGCCTATGTACAGgtatcacaac ... aatgttatagATAGCTGCATATGGGAAAGGTTTTGTGAAGGCATCACAAGACACTTGGGAG
EST: ATATCATGGAGTCCATCTTCAGATATGGCAATGGCTGGGCCTATGTACAG ATAGCTGCATATGGGAAAGGTTTTGTGAAGGCATCACAAGACACTTGGGAGEST: gi|110727745|gb|EE104856.1|EE104856
genomic: ATATCATGGAGTCCATCTTCAGATATGGCAATGGCTGGGCCTATGTACAGgtatcacaac ... aatgttatagATAGCTGCATATGGGAAAGGTTTTGTGAAGGCATCACAAGACACTTGGGAG
EST: ATATCATGGAGTCCATCTTCAGATATGGCAATGGCTGGGCCTATGTACAG ATAGCTGCATATGGGAAAGGTTTTGTGAAGGCATCACAAGACACTTGGGAG
genomic: ATATCATGGAGTCCATCTTCAGATATGGCAATGGCTGGGCCTATGTACAGgtatcacaac ... aatgttatagATAGCTGCATATGGGAAAGGTTTTGTGAAGGCATCACAAGACACTTGGGAG
tagacccctttcattgtgaaatggaattgaattatgtataaaataaatgttatagATAGCTGCATATGGGAAAGGTTTTGTGAAGGCATCACAAGACACTTGGGAGCTCTTTGAAAAGAGAGGAAAGGAAATGGAAGCCATCGTTGATTCTGACA
aaatggaattgaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtcttgggttgcttaatacacttgtctacttatcaattgtatagacccctttcattgtgaaatggaattgaattatgtataaaataaatgttatagATAGCTGCATATGGGAAAGGTTTTGTGAAGGCATCACAAGACACTTGGGAGCTCTTTGAAAAGAGAGGAAAGGAAATGGAAGCCATCGTTGATTCTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - tgggttg
- - - - - - - - - aatacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaat