1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcatctttgtttctttcattttcttgcctatgccctatcaatggcattgccttttctttcttgaccatgtctaaagaactgttggccgtttcatgtgcagGCATTTCGTGCTAATAATGTTGAAAGTGCAAAATCAAGGCTTAGTATATGCGCAGAAGATATCCGTGGTCAGTTGGAAAAACTGGGCAACACATCTGAAT
species | Vitis vinifera |
transcript | Vv13s0047g00170.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGATGTGTCTTTGGAGAGAGGTGCACTCTTGGTGCAACACGCGATGAGG GCATTTCGTGCTAATAATGTTGAAAGTGCAAAATCAAGGCTTAGTATATGCEST: gi|351038304|gb|FQ460996.1|FQ460996
genomic: AGGATGTGTCTTTGGAGAGAGGTGCATTCTTGGTGCAACACGCGATGAGGgtgggtttga ... tcatgtgcagGCATTTCGTGCTAATAATGTTGAAAGTGCAAAATCAAGGCTTAGTATATGC
EST: AGGATGTGTCTTTGGAGAGAGGTGCACTCTTGGTGCAACACGCGATGAGG GCATTTCGTGCTAATAATGTTGAAAGTGCAAAATCAAGGCTTAGTATATGCEST: gi|351055326|gb|FQ441924.1|FQ441924
genomic: AGGATGTGTCTTTGGAGAGAGGTGCATTCTTGGTGCAACACGCGATGAGGgtgggtttga ... tcatgtgcagGCATTTCGTGCTAATAATGTTGAAAGTGCAAAATCAAGGCTTAGTATATGC
EST: AGGATGTGTCTTTGGAGAGAGGTGCACTCTTGGTGCAACACGCGATGAGG GCATTTCGTGCTAATAATGTTGAAAGTGCAAAATCAAGGCTTAGTATATGCEST: gi|351038515|gb|FQ464381.1|FQ464381
genomic: AGGATGTGTCTTTGGAGAGAGGTGCATTCTTGGTGCAACACGCGATGAGGgtgggtttga ... tcatgtgcagGCATTTCGTGCTAATAATGTTGAAAGTGCAAAATCAAGGCTTAGTATATGC
EST: AGGATGTGTCTTTGGAGAGAGGTGCACTCTTGGTGCAACACGCGATGAGG GCATTTCGTGCTAATAATGTTGAAAGTGCAAAATCAAGGCTTAGTATATGC
genomic: AGGATGTGTCTTTGGAGAGAGGTGCATTCTTGGTGCAACACGCGATGAGGgtgggtttga ... tcatgtgcagGCATTTCGTGCTAATAATGTTGAAAGTGCAAAATCAAGGCTTAGTATATGC
attgccttttctttcttgaccatgtctaaagaactgttggccgtttcatgtgcagGCATTTCGTGCTAATAATGTTGAAAGTGCAAAATCAAGGCTTAGTATATGCGCAGAAGATATCCGTGGTCAGTTGGAAAAACTGGGCAACACATCTGAAT
gtctaaa putative branch site (score: 3)
ccgtttc putative PPT
ttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatctttgtttctttcattttcttgcctatgccctatcaatggcattgccttttctttcttgaccatgtctaaagaactgttggccgtttcatgtgcagGCATTTCGTGCTAATAATGTTGAAAGTGCAAAATCAAGGCTTAGTATATGCGCAGAAGATATCCGTGGTCAGTTGGAAAAACTGGGCAACACATCTGAAT
- - - - - - - - - - ttcttgc
- - - - - - - - - - - - - -ctatgcc
- - - - - - - - - - - - - - - - - ctatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggc