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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaggcatgttatcaatggcatgcattaagatgaacatgtaggcttgcttacttcccttcactaatcaatttgtcttcttttttatgctttctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAGCTGGTTCTGTAATTGGAAAGGGTGGTTCAACTATTAATGATTTTCAGTC

Basic information

species Vitis vinifera
transcript Vv13s0019g05360.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g05360.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G008410_T01 (Zea mays), 3'ss of exon 1
aaggcatgttatcaatggcatgcattaagatga-acatgtaggcttgcttacttcccttcactaatca-atttgtcttcttttttatgctttctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAGCTGGTTCTGTAATTGGAAAGGGTGGTTCAACTATTAATGATTTTCAGTC
  |   |||| | ||    |   |||    ||  | ||  |   | | |||  |      | | | || |||| |    |||    || | | |  | ||||||   | ||||||  | ||| |  | |||||||| || || ||| | ||||| || |   | ||||| |||||||| ||||| |||||||||||||||||
--gctgtgttttaaactttaaaaatttcattgttagattcataatggtttaactattgagattcaacatatttctgaagtttcaattgatatttcttctcagATGACAAGGAGAAACCAACACATTTGAGATTTCTAGTGTCTAATACGGCAGCAGGGTGCATCATTGGCAAGGGTGGATCAACCATTAATGATTTTCAGTC

upper sequence: Vv13s0019g05360.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G34220.2 (Glycine max), 3'ss of exon 1
-aaggcatgttatcaatggcatgcattaagatgaacatgtaggcttgcttacttcccttcactaatcaatttgtcttcttttttatgctttctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAGCTGGTTCTGTAATTGGAAAGGGTGGTTCAACTATTAATGATTTTCAGTC
      || | |   ||    |   |    |    |||  |    | |  |      || ||| |    |||||      ||||||| ||  | || ||||||| |  ||||||| | ||||||||||| ||||| ||||||||  |||| |||||||| || ||||||||||| ||||||||||| | ||||||||||||
tctaatatttgaattatattttttttctgaactg-catccatttgtacgcaaaagttttaacttaattctttgttactaattttatgtttatttctttcagATTCTGAGGAGAAGCCAACATACATTAGGTTTCTAGTATCAAACTCTGCGGCTGGTTCAGTTATTGGAAAGGGCGGTTCAACTATCACTGATTTTCAGTC

upper sequence: Vv13s0019g05360.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G33330.1 (Glycine max), 3'ss of exon 1
-aaggcatgttatcaatggcatgcatta-agatgaacatgtaggcttgcttacttcccttcactaatcaatttgtcttcttttttatgctttctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAGCTGGTTCTGTAATTGGAAAGGGTGGTTCAACTATTAATGATTTTCAGTC
  |  | | ||   ||| || |  |||| |  |  |  ||||   ||   ||      || ||| |    |||||  |   |||| || || || || ||||||| |  ||||||| | ||||| ||||| ||||| ||||||||  |||| |||||||| || ||||||||||| ||||||||||| | ||||||||||||
ttaaactttttcctaattgcgtctattatactttgatttgtaa--ttatataaaagttttaacttaattctttgttattaattttgtgtttgcttctatcagATTCTGAGGAGAAGCCAACATATATTAGGTTTCTAGTATCAAACTCTGCTGCTGGTTCGGTTATTGGAAAGGGCGGTTCAACTATCACTGATTTTCAGTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351046365|gb|FQ452981.1|FQ452981
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|352785971|gb|FQ481765.1|FQ481765
EST:     GCCCGAGGTCCCGCCCAGGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|351057061|gb|FQ448578.1|FQ448578
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|349823219|gb|FQ400198.1|FQ400198
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|351055155|gb|FQ440494.1|FQ440494
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|351043628|gb|FQ451559.1|FQ451559
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|351037387|gb|FQ460586.1|FQ460586
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|349820040|gb|FQ404762.1|FQ404762
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|349827032|gb|FQ421305.1|FQ421305
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|351052907|gb|FQ453894.1|FQ453894
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|351047124|gb|FQ454734.1|FQ454734
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|351047391|gb|FQ451903.1|FQ451903
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|351038420|gb|FQ461112.1|FQ461112
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|351031620|gb|FQ459877.1|FQ459877
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|351047415|gb|FQ451927.1|FQ451927
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|77585763|gb|DV221978.1|DV221978
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|351052809|gb|FQ456536.1|FQ456536
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|352793787|gb|FQ481941.1|FQ481941
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|351052237|gb|FQ452391.1|FQ452391
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|351053072|gb|FQ456679.1|FQ456679
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|351056381|gb|FQ454242.1|FQ454242
EST:     GCCCGAGGTCCCGCCCAGGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|349833330|gb|FQ416708.1|FQ416708
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|351054352|gb|FQ450435.1|FQ450435
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|351046045|gb|FQ441428.1|FQ441428
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|352791390|gb|FQ480969.1|FQ480969
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|351031627|gb|FQ459884.1|FQ459884
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|352793790|gb|FQ481944.1|FQ481944
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|110731764|gb|EE106471.1|EE106471
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|352786092|gb|FQ481887.1|FQ481887
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|351035492|gb|FQ463337.1|FQ463337
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|352790487|gb|FQ478127.1|FQ478127
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|351029639|gb|FQ427479.1|FQ427479
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|351032704|gb|FQ462418.1|FQ462418
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
EST: gi|352786228|gb|FQ478839.1|FQ478839
EST:     GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG                         ATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG
genomic: GCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAGgtgatcaatc ... ctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttacttcccttcactaatcaatttgtcttcttttttatgctttctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAGCTGGTTCTGTAATTGGAAAGGGTGGTTCAACTATTAATGATTTTCAGTC
             cactaat  putative branch site (score: 2)
                       tttgtcttctttttta  putative PPT
                             ttcttttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaggcatgttatcaatggcatgcattaagatgaacatgtaggcttgcttacttcccttcactaatcaatttgtcttcttttttatgctttctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAGCTGGTTCTGTAATTGGAAAGGGTGGTTCAACTATTAATGATTTTCAGTC

- -gcatgtt
- - - - - - - - -gcatgca
- - - - - - - - - - - - - - - -gaacatg
- - - - - - - - - - - - - - - - - - - - -gcttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - -cccttca