Sequence
atgc intronic sequence ATGC exonic sequence...ttgggaactagtgaaggtgacatttgtgtttttttttttttttttaaaagacaattcaagttgtttgttagtgatattttgttcttttttttggttgcagCTGGACAGGAGAGGTTTGGAACATTGACAAACACTTACTACAGAGGTGTCCATGGCATTATTCTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g05280.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os03g05280.1 (Oryza sativa), 3'ss of exon 2
-ttgggaactagtgaaggtgacatttgtgtttttttttttttttttaaaagacaattcaagttgtttgttagtgat-attttgttcttttttttggttgcagCTGGACAGGAGAGGTTTGGAACATTGACAAACACTTACTACAGAGGTGTCCATGGCATTATTCTAG
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catgatatttgttg--gctcaatcctgttcttctgtagcttatgttatttaatgatttcaaaagatttcaattgttcatggacttctttttattgcttgcagCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAG
upper sequence: Vv13s0019g05280.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G34120.1 (Glycine max), 3'ss of exon 2
ttgggaactagtgaaggtgacatttgtgtttttttttttttttttaaaagacaattcaa--gttgtttgtt--agtgatattttgttctttttt--ttggttgcagCTGGACAGGAGAGGTTTGGAACATTGACAAACACTTACTACAGAGGTGTCCATGGCATTATTCTAG
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------actatgatcactattacttgtaaattgaattctgtttatacgaaaccttgcaatggtgacttgttgcaattagattataatccttatttattttttgcagCTGGACAAGAGAGGTTTGGAACAGTAATAAGTTCTTATTATAGAGGCGCACATGGAATCATTCTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaagacaattcaagttgtttgttagtgatattttgttcttttttttggttgcagCTGGACAGGAGAGGTTTGGAACATTGACAAACACTTACTACAGAGGTGTCCATGGCATTATTCTAG
tattttgttctttttt CT-rich tract
tgatattttgttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgggaactagtgaaggtgacatttgtgtttttttttttttttttaaaagacaattcaagttgtttgttagtgatattttgttcttttttttggttgcagCTGGACAGGAGAGGTTTGGAACATTGACAAACACTTACTACAGAGGTGTCCATGGCATTATTCTAG
- - - - - - - - - - - - - - - - - - - - - - -aaaagac