Sequence
atgc intronic sequence ATGC exonic sequence...gtgtgtgtgtgtgtgtgttttttttttaatatatatataccttttttcgctttttcttttctcatctttgaatgtatcaaatttctatttctctgtgcagTGGTGGAAGATATATACAAGCGAAGGCAGCCATTGCCCTCAATGGACGCAATATACTTCATACAGCCAACCAAAGAGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g05000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G012942_T01 (Zea mays), 3'ss of exon 3
gtgtgtgtgtgtgtgtgttttttttttaatatatatataccttttttcgctt-------tttcttttctcatctttgaatgtatcaaatttctatttctctgtgcagTGGTGGAAGATATATACAAGCGAAGGCAGCCATTGCCCTCAATGGACGCAATATACTTCATACAGCCAACCAAAGAGAA
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-------tttgcagtcattttcttctaaaggcaactttacagtttcttacaagcagtaatgtatatacatacaaccatacaagttcagccttgacaattctttgcagTGGTTGAAGACCTATACAAACGGAGGCAGCCATTGCCTTCAATGGATGCAATTTATTTTATGCAGCCTACTAAAGAAAA
upper sequence: Vv13s0019g05000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G14450.1 (Glycine max), 3'ss of exon 3
gtgtgtgtgtgtgtgtgttttttttttaatatatatatacct-tttttcgctttttcttttctcatctttgaatgtatcaaatttctatttctctgtgcagTGGTGGAAGATATATACAAGCGAAGGCAGCCATTGCCCTCAATGGACGCAATATACTTCATACAGCCAACCAAAGAGAA
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-tatgattacactttcggaagaaaattattccctagacacccatattttgcacaactagttctaattcttgtatgtatgtgatttgtttttctttttgtagTAGTTGAAGACATATACAAGCGAAGGCAGCCATTGCCCACCTTGGATGCTATATACTTCATCCAGCCAACCAGAGAGAA
upper sequence: Vv13s0019g05000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G03970.1 (Glycine max), 3'ss of exon 4
gtgtgtgtgtgtgtgtgttttttttttaatatatatatacct-tttttcgctttttcttttctcatctttgaatg-tatcaaatttctatttctctgtgcagTGGTGGAAGATATATACAAGCGAAGGCAGCCATTGCCCTCAATGGACGCAATATACTTCATACAGCCAACCAAAGAGAA
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--atgattacactttcggaagaaaattattccatagacacccatattttgctcaactagttctaattcttgtatggtatgtgatttgtttttctttttgtagTGGTTGAAGACATATTCAAGCGAAGGCAACCATTGCCCACCATGGATGCTATATACTTCATCCAGCCAACCAGAGAGAA
upper sequence: Vv13s0019g05000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G03230.1 (Glycine max), 3'ss of exon 3
gtgtgtgtgtgtgtgtgttttttttttaatatata---tataccttttttcgctttttcttt---tctcatctttgaatgtatcaaatttctatt--tctctgtgcagTGGTGGAAGATATATACAAGCGAAGGCAGCCATTGCCCTCAATGGACGCAATATACTTCATACAGCCAACCAAAGAGAA
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--------gtaaggttattttcataatgatgggagcctcatccattaagcctccttttatttaggtttttttgttgtatgttgtgaaattttgctgctctttttgtagTGGTTGAAGACATATACAAGAGAAGGCAGCCATTGCCCACCATGGATGCTATATATTTCATCCAGCCAACCAGAGAAAA
upper sequence: Vv13s0019g05000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G12360.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgtgtgtgtgtgtgtgttttttttttaatatatatataccttttttcgctttttcttttctcatctttgaatgtatcaaatttctatttctctgtgcagTGGTGGAAGATATATACAAGCGAAGGCAGCCATTGCCCTCAATGGACGCAATATACTTCATACAGCCAACCAAAGAGAA
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----gtgagaatgaagtatttttgtacaaattcta-gttccatatgatactttatttgggaataactt-aattgtcgtaagatattatttctctgt--agTGGTTGAAGACATATTTAGACGAAGACAACCACTTCCTTCAATGGATGCAATATACTTCATCCAGCCAACTAAAGAGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcgctttttcttttctcatctttgaatgtatcaaatttctatttctctgtgcagTGGTGGAAGATATATACAAGCGAAGGCAGCCATTGCCCTCAATGGACGCAATATACTTCATACAGCCAACCAAAGAGAA
tttctatttctctgt CT-rich tract
tatcaaatttctattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtgtgtgtgtgtgtgttttttttttaatatatatataccttttttcgctttttcttttctcatctttgaatgtatcaaatttctatttctctgtgcagTGGTGGAAGATATATACAAGCGAAGGCAGCCATTGCCCTCAATGGACGCAATATACTTCATACAGCCAACCAAAGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcaaat