Sequence
atgc intronic sequence ATGC exonic sequence...ttatgactggagttactaatatataaaatttcaaattggaattgattggtttcttccaccgatttagcatctaatgataacgttgatcactttgctacagGTGGATCTCTACCTGCTTCCCCAGGTAGCATTTCCTACAGGAGGATTATACTTCAAGAACCAGACATGGGTGCAAGAAACAAAGGGATTGCATGTTATCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04760.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G09360.1 (Glycine max), 3'ss of exon 3
--ttatgactggagttactaatatataaaatttcaaa----ttggaattgattggtttcttccaccgatttagcatctaatgataacgttgatcactttgctacagGTGGATCTCTACCTGCTTCCCCAGGTAGCATTTCCTACAGGAGGATTATACTTCAAGAACCAGACATGGGTGCAAGAAACAAAGGGATTGCATGTTATCA
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cactaagaaggggttggtgggtttattttatttttaaaacatctaaaatg-cagatatatcatatatattgttctttttatgattacttt-----ttccattgcagGTGGATTTGTACCTGCTTCCACAGGCAGCATTCCCTACAGGCGGATTATATTTCAAGAACAAGGCATGGGTTAAGGAAACTAAAGGAATGCATGTTATCA
upper sequence: Vv13s0019g04760.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G01770.1 (Arabidopsis thaliana), 3'ss of exon 3
---------------ttatgactggagttactaatatataaaatt-tcaaattggaattgattggtttc--ttccaccgatttagcatctaatgataacgttg--atcactt-tgctacagGTGGATCTCTACCTGCTTCCCCAGGTAGCATTTCCTACAGGAGGATTATACTTCAAGAACCAGACATGGGTGCAAGAAACAAAGGGATTGCATGTTATCA
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gtatgtttttgtttccttcatgttctatttctactttatctacttattaatgttggatttatggtttttcttttagtctctttggtaactttgacttgttttgtgatcttttgttctgcagGTGGATCTCTACTTGCTTTCTCAAGTAGCTTTCCCAACAGGAGGATTGTACTTCAAGAACGAGGCATGGGTTCAAGAGACAAAGGGGAAACATGTCATAG
upper sequence: Vv13s0019g04760.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G01220.1 (Arabidopsis thaliana), 3'ss of exon 3
-ttatgactggagt-tactaatata--taaaatttcaaattggaattgattggtttcttccaccgatttagcatctaatgataacgttgatcactttgctacagGTGGATCTCTACCTGCTTCCCCAGGTAGCATTTCCTACAGGAGGATTATACTTCAAGAACCAGACATGGGTGCAAGAAACAAAGGGATTGCATGTTATCA
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tttagtactcactcctacgaatgttgtttcaattcgagaggtaatttgatttggtt--tgaattcattcttcaactctttttg-tatt-atctctgttctacagGTGGATATGTACTTGCTTTCGCAGGCAGCTTTCCCAACAGGAGGATTGTATTTCAAGAACAAAACATGGGTTAAAGAAACAAAGGGAAAACATGCGATAA
upper sequence: Vv13s0019g04760.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G01750.1 (Arabidopsis thaliana), 3'ss of exon 3
-ttatgactggagttactaatatataaaatttcaaattggaattgattggtttcttccaccgatttagcatctaatgataacgt----tgatcactt-tgctacagGTGGATCTCTACCTGCTTCCCCAGGTAGCATTTCCTACAGGAGGATTATACTTCAAGAACCAGACATGGGTGCAAGAAACAAAGGGATTGCATGTTATCA
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gttagtttttgtgtcctccacgttccatttcttcaaaatcaacgcatagaatcttcttatatacttatgagttataaatgttggattgtgatcttttgttctgcagGTGGATCTCTACTTGCTTTCTCAGGTAGCTTTTCCAACAGGAGGATTGTATTTCAATGATGCGGCATGGGTTAAAGAGACAAAGGGGAAACATGTCATAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110729936|gb|EE106444.1|EE106444EST: CAAATGATCAGCCTGCCTTTAACTGGGCACTAAACAGAACTGCAGCACAG GTGGATCTCTACCTGCTTCCCCAGGTAGCATTTCCTACAGGAGGATTATAC
genomic: CAAATGATCAGCCTGCCTTTAACTGGGCACTAAACAGAACTGCAGCACAGgtatgttctg ... tttgctacagGTGGATCTCTACCTGCTTCCCCAGGTAGCATTTCCTACAGGAGGATTATAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggtttcttccaccgatttagcatctaatgataacgttgatcactttgctacagGTGGATCTCTACCTGCTTCCCCAGGTAGCATTTCCTACAGGAGGATTATACTTCAAGAACCAGACATGGGTGCAAGAAACAAAGGGATTGCATGTTATCA
tcacttt CT-rich tract
taatgataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttatgactggagttactaatatataaaatttcaaattggaattgattggtttcttccaccgatttagcatctaatgataacgttgatcactttgctacagGTGGATCTCTACCTGCTTCCCCAGGTAGCATTTCCTACAGGAGGATTATACTTCAAGAACCAGACATGGGTGCAAGAAACAAAGGGATTGCATGTTATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- -tgactgg
- - - - - - - - - - - ataaaat
- - - - - - - - - - - - - - - - - - - - - tgattgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatcta